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The map label for this gene is pyrF [H]

Identifier: 226950666

GI number: 226950666

Start: 3689861

End: 3690712

Strand: Reverse

Name: pyrF [H]

Synonym: CLM_3650

Alternate gene names: 226950666

Gene position: 3690712-3689861 (Counterclockwise)

Preceding gene: 226950667

Following gene: 226950665

Centisome position: 88.82

GC content: 28.52

Gene sequence:

>852_bases
TTGATTATAGATAAATTGTATGAAAACGTAGAGAAAAAAGGATGTGTTTGTGTAGGCCTTGATACGGATATAAGTTATCT
ACCAAAAGGATTTTTAAATAAATTTACTAACATAGAAGATGCTATATTTGCATTTAATCAAAGGATAGTTGATTCAACTT
TTGATGTATCAGCTTGTTACAAAGTTCAGATAGCTTATTATGAGGCTATGGGAATTAAAGGAATGATTTTATATAAGAAA
ACTTTAGAATATATAAGAAAAAAAGGCGGTATAGTTATAGCAGATATAAAAAGAGGAGATATATCTGCTACAGCTAAAAT
GTATGCAAAAGCTCATTTTGAAGGAGATTTTGAAAGTGATTTTATAACATTAAACCCATATATGGGAATGGATACTTTAG
AACCGTATAAAGATTATTTCAAAAATAAGGAAAAGGGAGTTTTCTTGTTATTAAGAACTTCTAATGAAGGTTCAAAGGAT
ATACAATATTTAGATTTGAAAGACAATAAAAAGGTATACAACAAAGTAGGAGAAAAAATAGAGAACATAGGGAAAGAATT
TTTAGGCAATTGTAGATATAGTTCTATAGGAGCAGTAGTTGGATGTACAGCAGAAGAAAATAATATTAGAAAAGAATTAA
AACATACATTTTTCTTAATACCTGGCTATGGCGCTCAGGGAGGGAAAGCTGAAGTTGCTAAATATTATTTAAGTGGAGGT
AACGGAGGTATTGTAAATTCTTCAAGAGGGATATTGCTTGCATATAAAAAATATGATGAAGAAGGAAAAAACTTTGAAGA
ATGTGCAAGAAATGAAGTTATAAATATGAAAAAAACTTTACAGATTATATAG

Upstream 100 bases:

>100_bases
CTATGGATGGTATGTATCTTAAAGGAAGAGTTAAAGTTACATTTAAAGCAGGATGTATAGTATATAGTGAATTTTAATAG
AAAAAGAAAGGATGAATAAA

Downstream 100 bases:

>100_bases
ATTTACATTAAGTTATTATAAGTATTGGAAGAACTTATTAAGGAGTGTATTAGTAGTTGCTTCTTATCTAAAAAGAATAG
GGTATTGGACTTAGTAGCTA

Product: orotidine 5'-phosphate decarboxylase

Products: NA

Alternate protein names: OMP decarboxylase; OMPDCase; OMPdecase [H]

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MIIDKLYENVEKKGCVCVGLDTDISYLPKGFLNKFTNIEDAIFAFNQRIVDSTFDVSACYKVQIAYYEAMGIKGMILYKK
TLEYIRKKGGIVIADIKRGDISATAKMYAKAHFEGDFESDFITLNPYMGMDTLEPYKDYFKNKEKGVFLLLRTSNEGSKD
IQYLDLKDNKKVYNKVGEKIENIGKEFLGNCRYSSIGAVVGCTAEENNIRKELKHTFFLIPGYGAQGGKAEVAKYYLSGG
NGGIVNSSRGILLAYKKYDEEGKNFEECARNEVINMKKTLQII

Sequences:

>Translated_283_residues
MIIDKLYENVEKKGCVCVGLDTDISYLPKGFLNKFTNIEDAIFAFNQRIVDSTFDVSACYKVQIAYYEAMGIKGMILYKK
TLEYIRKKGGIVIADIKRGDISATAKMYAKAHFEGDFESDFITLNPYMGMDTLEPYKDYFKNKEKGVFLLLRTSNEGSKD
IQYLDLKDNKKVYNKVGEKIENIGKEFLGNCRYSSIGAVVGCTAEENNIRKELKHTFFLIPGYGAQGGKAEVAKYYLSGG
NGGIVNSSRGILLAYKKYDEEGKNFEECARNEVINMKKTLQII
>Mature_283_residues
MIIDKLYENVEKKGCVCVGLDTDISYLPKGFLNKFTNIEDAIFAFNQRIVDSTFDVSACYKVQIAYYEAMGIKGMILYKK
TLEYIRKKGGIVIADIKRGDISATAKMYAKAHFEGDFESDFITLNPYMGMDTLEPYKDYFKNKEKGVFLLLRTSNEGSKD
IQYLDLKDNKKVYNKVGEKIENIGKEFLGNCRYSSIGAVVGCTAEENNIRKELKHTFFLIPGYGAQGGKAEVAKYYLSGG
NGGIVNSSRGILLAYKKYDEEGKNFEECARNEVINMKKTLQII

Specific function: Unknown

COG id: COG0284

COG function: function code F; Orotidine-5'-phosphate decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OMP decarboxylase family. Type 2 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011995
- InterPro:   IPR001754
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00215 OMPdecase [H]

EC number: =4.1.1.23 [H]

Molecular weight: Translated: 31961; Mature: 31961

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIIDKLYENVEKKGCVCVGLDTDISYLPKGFLNKFTNIEDAIFAFNQRIVDSTFDVSACY
CCHHHHHHHHHHCCCEEEEECCCHHHCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEE
KVQIAYYEAMGIKGMILYKKTLEYIRKKGGIVIADIKRGDISATAKMYAKAHFEGDFESD
EEEEEEEECCCCCEEEEHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCC
FITLNPYMGMDTLEPYKDYFKNKEKGVFLLLRTSNEGSKDIQYLDLKDNKKVYNKVGEKI
EEEECCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHH
ENIGKEFLGNCRYSSIGAVVGCTAEENNIRKELKHTFFLIPGYGAQGGKAEVAKYYLSGG
HHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHEEEEEECCCCCCCHHHEEEEEEECC
NGGIVNSSRGILLAYKKYDEEGKNFEECARNEVINMKKTLQII
CCCEEECCCCEEEEEECCCCCCCCHHHHHHHHHHCHHHHEECC
>Mature Secondary Structure
MIIDKLYENVEKKGCVCVGLDTDISYLPKGFLNKFTNIEDAIFAFNQRIVDSTFDVSACY
CCHHHHHHHHHHCCCEEEEECCCHHHCCHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEE
KVQIAYYEAMGIKGMILYKKTLEYIRKKGGIVIADIKRGDISATAKMYAKAHFEGDFESD
EEEEEEEECCCCCEEEEHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCC
FITLNPYMGMDTLEPYKDYFKNKEKGVFLLLRTSNEGSKDIQYLDLKDNKKVYNKVGEKI
EEEECCCCCCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHH
ENIGKEFLGNCRYSSIGAVVGCTAEENNIRKELKHTFFLIPGYGAQGGKAEVAKYYLSGG
HHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHEEEEEECCCCCCCHHHEEEEEEECC
NGGIVNSSRGILLAYKKYDEEGKNFEECARNEVINMKKTLQII
CCCEEECCCCEEEEEECCCCCCCCHHHHHHHHHHCHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA