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The map label for this gene is yqbP [H]

Identifier: 226949705

GI number: 226949705

Start: 2665754

End: 2666434

Strand: Reverse

Name: yqbP [H]

Synonym: CLM_2645

Alternate gene names: 226949705

Gene position: 2666434-2665754 (Counterclockwise)

Preceding gene: 226949706

Following gene: 226949704

Centisome position: 64.17

GC content: 29.66

Gene sequence:

>681_bases
ATGAACTATACAATGTATTTAGGAATTAATGATGGTGAAGAAGGATTTATACTCCCAGTGTTACCAGAGAAGATTGAATT
TGATGAAGATGGAAATAATAAAACATACGATATAATTAATTTAGGAGAAATCAATACAATAAATAAACCTAAGTTGATGG
AAATAAGCTTTGAAAGCTTCTTCCCCAAGCATAAAGGTCCTTATGTAAGCTCGGAGAAATTATTTGAACCGAGCTTTTAT
ATTGCAAAGATTAGAGAATGGAGAGATAAAAAACAAAAGATAAGATTTATATTTACAGGCAGTCCTTTAGAAATTAATGA
TCTATTTACTATAGAAAGTTTTAAACCTAGCGAAGAAGGTGGGGAAGTTGGAGATATACATTATTCTATAGAACTAAAAA
GATATAAAAACTATGCTGCTAAAAAAATAGTTATAGTAACATCAAAAACTGCAGCAGCTAATCAATCTGTGAAAAAAGTA
ATAGCAAACTCCAAGGCTACAAGACCAAGTAATACTAATAAACCTAAAACACACACAGTTAGCGGTAATGATACGTTATG
GCATATAGCTAAAAGATATTTAGGTGATGGTAATAAGTGGCCACAAATTTATAATCTAAATAAAGACAAAATTAAGAATC
CTAATTTAATATATACAGGACAAGTTTTAAGGCTTCCATAG

Upstream 100 bases:

>100_bases
GAGATATTAAAGAAGAAGCAGACATAAACAAAATAATATCTAAAATAGAGAATTACATGGAAAATGAATTGACTAACAGC
GCCGAGGGGGTATATGCTTA

Downstream 100 bases:

>100_bases
GTGGTGATAGGTTGAATATACAATTGTTACTGGATAATAAAGATGGGAATGTATTTGATATATCTGAATTAACAAACGAA
GTTACTTGGAAAACTAAAAG

Product: lysM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MNYTMYLGINDGEEGFILPVLPEKIEFDEDGNNKTYDIINLGEINTINKPKLMEISFESFFPKHKGPYVSSEKLFEPSFY
IAKIREWRDKKQKIRFIFTGSPLEINDLFTIESFKPSEEGGEVGDIHYSIELKRYKNYAAKKIVIVTSKTAAANQSVKKV
IANSKATRPSNTNKPKTHTVSGNDTLWHIAKRYLGDGNKWPQIYNLNKDKIKNPNLIYTGQVLRLP

Sequences:

>Translated_226_residues
MNYTMYLGINDGEEGFILPVLPEKIEFDEDGNNKTYDIINLGEINTINKPKLMEISFESFFPKHKGPYVSSEKLFEPSFY
IAKIREWRDKKQKIRFIFTGSPLEINDLFTIESFKPSEEGGEVGDIHYSIELKRYKNYAAKKIVIVTSKTAAANQSVKKV
IANSKATRPSNTNKPKTHTVSGNDTLWHIAKRYLGDGNKWPQIYNLNKDKIKNPNLIYTGQVLRLP
>Mature_226_residues
MNYTMYLGINDGEEGFILPVLPEKIEFDEDGNNKTYDIINLGEINTINKPKLMEISFESFFPKHKGPYVSSEKLFEPSFY
IAKIREWRDKKQKIRFIFTGSPLEINDLFTIESFKPSEEGGEVGDIHYSIELKRYKNYAAKKIVIVTSKTAAANQSVKKV
IANSKATRPSNTNKPKTHTVSGNDTLWHIAKRYLGDGNKWPQIYNLNKDKIKNPNLIYTGQVLRLP

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 25940; Mature: 25940

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYTMYLGINDGEEGFILPVLPEKIEFDEDGNNKTYDIINLGEINTINKPKLMEISFESF
CCEEEEEEECCCCCCEEEEECCCEEECCCCCCCCEEEEEECCCCCCCCCCEEEEEEHHHH
FPKHKGPYVSSEKLFEPSFYIAKIREWRDKKQKIRFIFTGSPLEINDLFTIESFKPSEEG
CCCCCCCCCCCCCEECCCHHHHHHHHHHCCCCEEEEEECCCCEEECEEEEEECCCCCCCC
GEVGDIHYSIELKRYKNYAAKKIVIVTSKTAAANQSVKKVIANSKATRPSNTNKPKTHTV
CCEEEEEEEEEEEHHCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE
SGNDTLWHIAKRYLGDGNKWPQIYNLNKDKIKNPNLIYTGQVLRLP
CCCCHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCEEEECEEEECC
>Mature Secondary Structure
MNYTMYLGINDGEEGFILPVLPEKIEFDEDGNNKTYDIINLGEINTINKPKLMEISFESF
CCEEEEEEECCCCCCEEEEECCCEEECCCCCCCCEEEEEECCCCCCCCCCEEEEEEHHHH
FPKHKGPYVSSEKLFEPSFYIAKIREWRDKKQKIRFIFTGSPLEINDLFTIESFKPSEEG
CCCCCCCCCCCCCEECCCHHHHHHHHHHCCCCEEEEEECCCCEEECEEEEEECCCCCCCC
GEVGDIHYSIELKRYKNYAAKKIVIVTSKTAAANQSVKKVIANSKATRPSNTNKPKTHTV
CCEEEEEEEEEEEHHCCCCCEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEE
SGNDTLWHIAKRYLGDGNKWPQIYNLNKDKIKNPNLIYTGQVLRLP
CCCCHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCEEEECEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704261; 8969508; 9384377; 7489895 [H]