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The map label for this gene is ybdM [H]

Identifier: 226949459

GI number: 226949459

Start: 2468728

End: 2469462

Strand: Reverse

Name: ybdM [H]

Synonym: CLM_2392

Alternate gene names: 226949459

Gene position: 2469462-2468728 (Counterclockwise)

Preceding gene: 226949460

Following gene: 226949456

Centisome position: 59.43

GC content: 22.31

Gene sequence:

>735_bases
ATGGTCATAAAATTTTTTAAAAGAGACACTAAATATTTACCAGAGCAAAAAATTCATGGATATACTGTTCTAAAAATACT
TGGAGAAGGTAGGTTTGGAATTTGTTACTTAGTCCAAAGTAATAATAAACAGTATATATTAAAACAATTAAAAACAAAAA
TGTTAAAAAAGATAGGAAGTAAAGTTATTTATGAACAAGAAATATTAAAGAATATTAATCATAACTGTATTCCGAAATTT
ATAAAAACATTACAATTCAAAAAATTTTTTGGATATGTTTTAGAATACAAAGAAGGCAAAACTTTTGAAGAGATTATTTG
TGAAGATGAATATGTTTTTAAAAGAGAAGAAATCTATGACATATGCATTCAAATTATTGAAATTTTAAAGTATTTGCATA
AGAGTGGAATAGTACATAGAGATATAAGAATTCCAAATACAATATATTATAAGAAAAAGGTTAATTTAGTAGATTTTGGA
TTAGCTAGATGGATTAATAATAAGAGATACATTGAGAATGTAGACTTTTCATATTTAGGAGATTTCTTATTACATTTATA
TTATACATCCTTTCAATGTAAAACTTTTAAGGGAAAGCCTTGGTATGAGGAATTGGATTTATTTAGTGAAGAAATGAATT
TTTTAAAAAGATTGTTAGAGATTGAGAAAAAATATAAAAATATAGAAGAAGTAGAAAGAGATTTCTTATTATTAAAAAGT
AATTATAATAAGTAA

Upstream 100 bases:

>100_bases
AATCAGGATTTTTGGGGTCTATGATGTCTGTATTTTCTTCAAAGAGTAGATCTTATTCACATTCATATAAAAGGCATAAC
CGCCGAAAAAAATATAGTTC

Downstream 100 bases:

>100_bases
GATGCAGTTTAAAGTAAGGTTGTGTGTCAAAATAAAATTAAGTCTATTTTGACACACTCTATTTAATTTATTTCTTCTTA
TTATAAAATAGTAAACCGGA

Product: protein kinase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MVIKFFKRDTKYLPEQKIHGYTVLKILGEGRFGICYLVQSNNKQYILKQLKTKMLKKIGSKVIYEQEILKNINHNCIPKF
IKTLQFKKFFGYVLEYKEGKTFEEIICEDEYVFKREEIYDICIQIIEILKYLHKSGIVHRDIRIPNTIYYKKKVNLVDFG
LARWINNKRYIENVDFSYLGDFLLHLYYTSFQCKTFKGKPWYEELDLFSEEMNFLKRLLEIEKKYKNIEEVERDFLLLKS
NYNK

Sequences:

>Translated_244_residues
MVIKFFKRDTKYLPEQKIHGYTVLKILGEGRFGICYLVQSNNKQYILKQLKTKMLKKIGSKVIYEQEILKNINHNCIPKF
IKTLQFKKFFGYVLEYKEGKTFEEIICEDEYVFKREEIYDICIQIIEILKYLHKSGIVHRDIRIPNTIYYKKKVNLVDFG
LARWINNKRYIENVDFSYLGDFLLHLYYTSFQCKTFKGKPWYEELDLFSEEMNFLKRLLEIEKKYKNIEEVERDFLLLKS
NYNK
>Mature_244_residues
MVIKFFKRDTKYLPEQKIHGYTVLKILGEGRFGICYLVQSNNKQYILKQLKTKMLKKIGSKVIYEQEILKNINHNCIPKF
IKTLQFKKFFGYVLEYKEGKTFEEIICEDEYVFKREEIYDICIQIIEILKYLHKSGIVHRDIRIPNTIYYKKKVNLVDFG
LARWINNKRYIENVDFSYLGDFLLHLYYTSFQCKTFKGKPWYEELDLFSEEMNFLKRLLEIEKKYKNIEEVERDFLLLKS
NYNK

Specific function: Unknown

COG id: COG0515

COG function: function code RTKL; Serine/threonine protein kinase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 protein kinase domain [H]

Homologues:

Organism=Homo sapiens, GI41872673, Length=152, Percent_Identity=32.2368421052632, Blast_Score=72, Evalue=7e-13,
Organism=Homo sapiens, GI217330634, Length=150, Percent_Identity=30, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17511015, Length=169, Percent_Identity=27.2189349112426, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17539480, Length=172, Percent_Identity=26.7441860465116, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24649791, Length=164, Percent_Identity=25.609756097561, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221330104, Length=150, Percent_Identity=30, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011009
- InterPro:   IPR000719
- InterPro:   IPR017441
- InterPro:   IPR017442 [H]

Pfam domain/function: PF00069 Pkinase [H]

EC number: =2.7.11.1 [H]

Molecular weight: Translated: 29701; Mature: 29701

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: PS00107 PROTEIN_KINASE_ATP ; PS50011 PROTEIN_KINASE_DOM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIKFFKRDTKYLPEQKIHGYTVLKILGEGRFGICYLVQSNNKQYILKQLKTKMLKKIGS
CEEEEECCHHHCCCCHHCCCEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHH
KVIYEQEILKNINHNCIPKFIKTLQFKKFFGYVLEYKEGKTFEEIICEDEYVFKREEIYD
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHH
ICIQIIEILKYLHKSGIVHRDIRIPNTIYYKKKVNLVDFGLARWINNKRYIENVDFSYLG
HHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEECCHHHHHHHHHHCCCHHHHCCCHHHHH
DFLLHLYYTSFQCKTFKGKPWYEELDLFSEEMNFLKRLLEIEKKYKNIEEVERDFLLLKS
HHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHEECCC
NYNK
CCCC
>Mature Secondary Structure
MVIKFFKRDTKYLPEQKIHGYTVLKILGEGRFGICYLVQSNNKQYILKQLKTKMLKKIGS
CEEEEECCHHHCCCCHHCCCEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHH
KVIYEQEILKNINHNCIPKFIKTLQFKKFFGYVLEYKEGKTFEEIICEDEYVFKREEIYD
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHH
ICIQIIEILKYLHKSGIVHRDIRIPNTIYYKKKVNLVDFGLARWINNKRYIENVDFSYLG
HHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEECCHHHHHHHHHHCCCHHHHCCCHHHHH
DFLLHLYYTSFQCKTFKGKPWYEELDLFSEEMNFLKRLLEIEKKYKNIEEVERDFLLLKS
HHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHEECCC
NYNK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]