Click here to switch to the map view.

The map label for this gene is sufD [H]

Identifier: 226224962

GI number: 226224962

Start: 2456270

End: 2457571

Strand: Reverse

Name: sufD [H]

Synonym: Lm4b_02383

Alternate gene names: 226224962

Gene position: 2457571-2456270 (Counterclockwise)

Preceding gene: 226224963

Following gene: 226224961

Centisome position: 84.37

GC content: 40.94

Gene sequence:

>1302_bases
ATGGCAGAAAATATGACGATTAAAGATGATTTTATCCACGCTTTTTCAAGTAATGCGAATGAACCGGATTGGTTTTTAGA
TATCCGTCGCAATGCTTTTAAAGCCTACGGGGAACTGGACTTGCCTTTTGTGGATAAAACAAAAATTACTCGCTGGAATT
TCACAAAGTTTGAGACGTTTATACCTTTTAAAGAAGGCGTAACGAATGAAACTCTACCGGAAAAAGTAGCGAATTTAGTT
GATTTAGATAATAAAGAAGCCAATTTTTACGTTCAAATGGATGAAAGACCTGCGAGACTTCAGTTGCAACAAGAACTAGT
TGACCAAGGCGTTATTTTCACAGATATTATTTCGGCTGTGAAAAACCATCCTGAACTTGTGAAGAAATATTTCATGAAAG
ATGCAGTTCAAGTGAATGAACACAAACTGACTGCTTTTCATGCGGCGCTTGTGAACGGTGGGATTTTCCTTTATGTTCCT
AAAAATGTCGAAGTGAAAGCACCAATTCAAGCTGTTTTCGTACAAGATAAAGCGGAATCTCCACTTGTTAACCATGTGTT
GCTTGTGGCGGATGATAATAGCTCAGTCACTTATGTGGAAAACTACGTAACGGTAGATAACGCACCTAAAGGGATTGTTA
GCATTGTGGAAGAAGTAATCGCTGAGAAAAATGCGCGCATTACTTTTGGCGGTGTAGACAATCTTGCAAGTGATGTTACG
ACATATGTGAACCGTCGTGGACACATTGGAACAGATAGCCAAATTGAATGGGCGCTTGGCCTGATGAATGATGGCGATAC
TATCAACGAGAACGTAACAAACCTAATGGGAGACGGCTCTTCTGCTGATGTGAAAACGGTGACTGTTGGACGCGGGAAGC
AAACGCAAAACGTGACAACGCGCGTGACGCATTACGGTAAAGCTTCTAATGGTACGATTTTATCCCATGGTGTTATGAAA
GAAAGAGCGACAACTATTTTTAACGGAATTGGCCACATTAAACATGGCGCTTCTAAGTCAGATGCACAACAAGAATCACG
TGTACTGATGCTTAGTCCTGAAGCACGCGGTGATGCGAACCCAATTTTATTAATTGATGAAAATGACGTAGTAGCAGGGC
ATGCGGCTTCTGTTGGACGCGTTGATCCACTACAATTATTCTATTTGATGAGTCGCGGGATTTCTCAAAAAGAAGCAGAA
AGATTAGTTATTCATGGCTTCTTAGATCCTGTTGTTCGTCAGTTACCAATCGAAAGTGTGAAAACGATGCTTCGTGAAGT
AATCGAAGGGAAAGTGCGCTAA

Upstream 100 bases:

>100_bases
TTTAGAAGCAGAAGGTTATGACTGGATTAAACAAGAGCTTGGTATCGAACTTGAGGAAGAAGAAGCAGTAGACCAACAAT
AAGGAAGTGAGGTTAAAATC

Downstream 100 bases:

>100_bases
ATGATTGATATCCAAAAAATTCGGGCGGATTTTCCAATTTTAGCTCAAGAAATAAATGAAAAACCGCTAGCTTATTTAGA
TAATGCTGCCACTTCACAAA

Product: aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 433; Mature: 432

Protein sequence:

>433_residues
MAENMTIKDDFIHAFSSNANEPDWFLDIRRNAFKAYGELDLPFVDKTKITRWNFTKFETFIPFKEGVTNETLPEKVANLV
DLDNKEANFYVQMDERPARLQLQQELVDQGVIFTDIISAVKNHPELVKKYFMKDAVQVNEHKLTAFHAALVNGGIFLYVP
KNVEVKAPIQAVFVQDKAESPLVNHVLLVADDNSSVTYVENYVTVDNAPKGIVSIVEEVIAEKNARITFGGVDNLASDVT
TYVNRRGHIGTDSQIEWALGLMNDGDTINENVTNLMGDGSSADVKTVTVGRGKQTQNVTTRVTHYGKASNGTILSHGVMK
ERATTIFNGIGHIKHGASKSDAQQESRVLMLSPEARGDANPILLIDENDVVAGHAASVGRVDPLQLFYLMSRGISQKEAE
RLVIHGFLDPVVRQLPIESVKTMLREVIEGKVR

Sequences:

>Translated_433_residues
MAENMTIKDDFIHAFSSNANEPDWFLDIRRNAFKAYGELDLPFVDKTKITRWNFTKFETFIPFKEGVTNETLPEKVANLV
DLDNKEANFYVQMDERPARLQLQQELVDQGVIFTDIISAVKNHPELVKKYFMKDAVQVNEHKLTAFHAALVNGGIFLYVP
KNVEVKAPIQAVFVQDKAESPLVNHVLLVADDNSSVTYVENYVTVDNAPKGIVSIVEEVIAEKNARITFGGVDNLASDVT
TYVNRRGHIGTDSQIEWALGLMNDGDTINENVTNLMGDGSSADVKTVTVGRGKQTQNVTTRVTHYGKASNGTILSHGVMK
ERATTIFNGIGHIKHGASKSDAQQESRVLMLSPEARGDANPILLIDENDVVAGHAASVGRVDPLQLFYLMSRGISQKEAE
RLVIHGFLDPVVRQLPIESVKTMLREVIEGKVR
>Mature_432_residues
AENMTIKDDFIHAFSSNANEPDWFLDIRRNAFKAYGELDLPFVDKTKITRWNFTKFETFIPFKEGVTNETLPEKVANLVD
LDNKEANFYVQMDERPARLQLQQELVDQGVIFTDIISAVKNHPELVKKYFMKDAVQVNEHKLTAFHAALVNGGIFLYVPK
NVEVKAPIQAVFVQDKAESPLVNHVLLVADDNSSVTYVENYVTVDNAPKGIVSIVEEVIAEKNARITFGGVDNLASDVTT
YVNRRGHIGTDSQIEWALGLMNDGDTINENVTNLMGDGSSADVKTVTVGRGKQTQNVTTRVTHYGKASNGTILSHGVMKE
RATTIFNGIGHIKHGASKSDAQQESRVLMLSPEARGDANPILLIDENDVVAGHAASVGRVDPLQLFYLMSRGISQKEAER
LVIHGFLDPVVRQLPIESVKTMLREVIEGKVR

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI87081955, Length=444, Percent_Identity=25, Blast_Score=165, Evalue=5e-42,
Organism=Escherichia coli, GI1787971, Length=149, Percent_Identity=29.5302013422819, Blast_Score=79, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 48062; Mature: 47931

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAENMTIKDDFIHAFSSNANEPDWFLDIRRNAFKAYGELDLPFVDKTKITRWNFTKFETF
CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEE
IPFKEGVTNETLPEKVANLVDLDNKEANFYVQMDERPARLQLQQELVDQGVIFTDIISAV
CCHHCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHH
KNHPELVKKYFMKDAVQVNEHKLTAFHAALVNGGIFLYVPKNVEVKAPIQAVFVQDKAES
HCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCCCEEECCEEEEEEECCCCC
PLVNHVLLVADDNSSVTYVENYVTVDNAPKGIVSIVEEVIAEKNARITFGGVDNLASDVT
CCEEEEEEEEECCCCEEEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH
TYVNRRGHIGTDSQIEWALGLMNDGDTINENVTNLMGDGSSADVKTVTVGRGKQTQNVTT
HHHHCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEE
RVTHYGKASNGTILSHGVMKERATTIFNGIGHIKHGASKSDAQQESRVLMLSPEARGDAN
EEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCEEEECCCCCCCCC
PILLIDENDVVAGHAASVGRVDPLQLFYLMSRGISQKEAERLVIHGFLDPVVRQLPIESV
CEEEECCCCEEECCCCCCCCCCHHHHHHHHHCCCCHHHHHHEEHHHHHHHHHHHCCHHHH
KTMLREVIEGKVR
HHHHHHHHCCCCC
>Mature Secondary Structure 
AENMTIKDDFIHAFSSNANEPDWFLDIRRNAFKAYGELDLPFVDKTKITRWNFTKFETF
CCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEE
IPFKEGVTNETLPEKVANLVDLDNKEANFYVQMDERPARLQLQQELVDQGVIFTDIISAV
CCHHCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCHHHHHHHHH
KNHPELVKKYFMKDAVQVNEHKLTAFHAALVNGGIFLYVPKNVEVKAPIQAVFVQDKAES
HCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEEEEECCCCEEECCEEEEEEECCCCC
PLVNHVLLVADDNSSVTYVENYVTVDNAPKGIVSIVEEVIAEKNARITFGGVDNLASDVT
CCEEEEEEEEECCCCEEEEEEEEEECCCCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHH
TYVNRRGHIGTDSQIEWALGLMNDGDTINENVTNLMGDGSSADVKTVTVGRGKQTQNVTT
HHHHCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEE
RVTHYGKASNGTILSHGVMKERATTIFNGIGHIKHGASKSDAQQESRVLMLSPEARGDAN
EEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCEEEECCCCCCCCC
PILLIDENDVVAGHAASVGRVDPLQLFYLMSRGISQKEAERLVIHGFLDPVVRQLPIESV
CEEEECCCCEEECCCCCCCCCCHHHHHHHHHCCCCHHHHHHEEHHHHHHHHHHHCCHHHH
KTMLREVIEGKVR
HHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]