BacMap

Definition	Listeria monocytogenes Clip81459, complete genome.
Accession	NC_012488
Length	2,912,690

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The map label for this gene is yurY [H]

Identifier: 226224963

GI number: 226224963

Start: 2457590

End: 2458375

Strand: Reverse

Name: yurY [H]

Synonym: Lm4b_02384

Alternate gene names: 226224963

Gene position: 2458375-2457590 (Counterclockwise)

Preceding gene: 226224965

Following gene: 226224962

Centisome position: 84.4

GC content: 39.95

Gene sequence:

>786_bases
ATGGCAACTTTAAAGATTCAAGATTTACATGTTGAAATAGAAGGAAAAGAAATTTTGAAGGGTGTTAACCTGGAAATTTC
AACTGGCGAAATCCACGCTATTATGGGACCGAACGGAACAGGTAAATCTACGTTGTCCTCAGCTATTATGGGGCATCCAA
AATATGAAGTAACACAAGGAACAATCACGCTTGACGGGGAAGATGTACTCGAAATGGAAGTAGACGAACGCGCTCGTGCT
GGTCTTTTCTTAGCGATGCAATATCCAAGTGAGATTAGTGGTGTTACAAACGCTGAATTCATTCGTGCAGCAATCAATAG
CCGCCGCGAAGAAGGCGACGAAATTCCAGTAATGCAATTCATCCGCAAACTAGATGCCAAAATGGATATTTTAGATATGG
ACGAAGAAATGGCGGAACGTTATTTAAATGAAGGATTTTCAGGCGGAGAGAAAAAACGTAATGAAATCTTGCAATTATTA
ATGATCGAGCCAAAATTAGCGATTTTAGATGAAATTGACTCTGGTCTTGATATCGATGCGCTTAAAGTTGTCTCTAAAGG
TGTAAATGAAATGCGCGGCGAAGGATTCGGTTGCTTAATCATTACCCATTACCAACGTTTACTGAACTACATCACACCAG
ATTTTGTTCACGTAATGATGCAAGGTAAAGTAGTAAAAGAAGGCGGACCTGAACTTGCGAAACGTTTAGAAGCAGAAGGT
TATGACTGGATTAAACAAGAGCTTGGTATCGAACTTGAGGAAGAAGAAGCAGTAGACCAACAATAA

Upstream 100 bases:

>100_bases
AAGGGGAGAATACGAAGAATACTGGTTTTTATAGTTGTAATCAGATTAGAATTATACTAAACTAGGATTATGCAAATTTT
ACACTAGGGAGGACTTTTTT

Downstream 100 bases:

>100_bases
GGAAGTGAGGTTAAAATCATGGCAGAAAATATGACGATTAAAGATGATTTTATCCACGCTTTTTCAAGTAATGCGAATGA
ACCGGATTGGTTTTTAGATA

Product: ABC transporter, ATP-binding protein

Products: NA

Alternate protein names: VEG296 [H]

Number of amino acids: Translated: 261; Mature: 260

Protein sequence:

>261_residues
MATLKIQDLHVEIEGKEILKGVNLEISTGEIHAIMGPNGTGKSTLSSAIMGHPKYEVTQGTITLDGEDVLEMEVDERARA
GLFLAMQYPSEISGVTNAEFIRAAINSRREEGDEIPVMQFIRKLDAKMDILDMDEEMAERYLNEGFSGGEKKRNEILQLL
MIEPKLAILDEIDSGLDIDALKVVSKGVNEMRGEGFGCLIITHYQRLLNYITPDFVHVMMQGKVVKEGGPELAKRLEAEG
YDWIKQELGIELEEEEAVDQQ

Sequences:

>Translated_261_residues
MATLKIQDLHVEIEGKEILKGVNLEISTGEIHAIMGPNGTGKSTLSSAIMGHPKYEVTQGTITLDGEDVLEMEVDERARA
GLFLAMQYPSEISGVTNAEFIRAAINSRREEGDEIPVMQFIRKLDAKMDILDMDEEMAERYLNEGFSGGEKKRNEILQLL
MIEPKLAILDEIDSGLDIDALKVVSKGVNEMRGEGFGCLIITHYQRLLNYITPDFVHVMMQGKVVKEGGPELAKRLEAEG
YDWIKQELGIELEEEEAVDQQ
>Mature_260_residues
ATLKIQDLHVEIEGKEILKGVNLEISTGEIHAIMGPNGTGKSTLSSAIMGHPKYEVTQGTITLDGEDVLEMEVDERARAG
LFLAMQYPSEISGVTNAEFIRAAINSRREEGDEIPVMQFIRKLDAKMDILDMDEEMAERYLNEGFSGGEKKRNEILQLLM
IEPKLAILDEIDSGLDIDALKVVSKGVNEMRGEGFGCLIITHYQRLLNYITPDFVHVMMQGKVVKEGGPELAKRLEAEGY
DWIKQELGIELEEEEAVDQQ

Specific function: Unknown

COG id: COG0396

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI148612844, Length=217, Percent_Identity=32.258064516129, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI255708477, Length=217, Percent_Identity=32.258064516129, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI9961252, Length=218, Percent_Identity=31.1926605504587, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI4505771, Length=218, Percent_Identity=31.1926605504587, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI9961250, Length=241, Percent_Identity=30.7053941908714, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI42741659, Length=213, Percent_Identity=29.5774647887324, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI21536378, Length=222, Percent_Identity=29.7297297297297, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI42490749, Length=240, Percent_Identity=28.75, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI89111135, Length=217, Percent_Identity=28.110599078341, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1787972, Length=246, Percent_Identity=51.219512195122, Blast_Score=259, Evalue=1e-70,
Organism=Escherichia coli, GI1787759, Length=247, Percent_Identity=31.5789473684211, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787029, Length=224, Percent_Identity=29.0178571428571, Blast_Score=78, Evalue=5e-16,
Organism=Escherichia coli, GI1788761, Length=240, Percent_Identity=25.4166666666667, Blast_Score=74, Evalue=7e-15,
Organism=Escherichia coli, GI1789593, Length=230, Percent_Identity=26.0869565217391, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789891, Length=215, Percent_Identity=26.9767441860465, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1787500, Length=243, Percent_Identity=30.4526748971193, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786319, Length=190, Percent_Identity=29.4736842105263, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787370, Length=221, Percent_Identity=26.6968325791855, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081709, Length=225, Percent_Identity=23.5555555555556, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789864, Length=237, Percent_Identity=26.5822784810127, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788225, Length=235, Percent_Identity=25.9574468085106, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1790525, Length=219, Percent_Identity=31.0502283105023, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786654, Length=242, Percent_Identity=26.4462809917355, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790739, Length=238, Percent_Identity=26.0504201680672, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87081791, Length=231, Percent_Identity=26.8398268398268, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787143, Length=231, Percent_Identity=25.974025974026, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786653, Length=251, Percent_Identity=26.2948207171315, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1790190, Length=194, Percent_Identity=26.2886597938144, Blast_Score=62, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI193209708, Length=233, Percent_Identity=29.1845493562232, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI71996809, Length=246, Percent_Identity=27.6422764227642, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI193211015, Length=244, Percent_Identity=27.8688524590164, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI25146777, Length=216, Percent_Identity=29.1666666666667, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI212646699, Length=244, Percent_Identity=28.2786885245902, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI193211017, Length=244, Percent_Identity=27.8688524590164, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17541710, Length=223, Percent_Identity=28.2511210762332, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17567269, Length=251, Percent_Identity=28.2868525896414, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17565938, Length=248, Percent_Identity=28.6290322580645, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI71984940, Length=253, Percent_Identity=29.6442687747036, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17567265, Length=236, Percent_Identity=26.271186440678, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI193202349, Length=233, Percent_Identity=27.0386266094421, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17569145, Length=226, Percent_Identity=28.7610619469027, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI115535101, Length=256, Percent_Identity=27.34375, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17569143, Length=222, Percent_Identity=25.6756756756757, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17558664, Length=226, Percent_Identity=27.4336283185841, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17543740, Length=234, Percent_Identity=28.6324786324786, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI115533592, Length=222, Percent_Identity=27.9279279279279, Blast_Score=65, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6324498, Length=197, Percent_Identity=28.4263959390863, Blast_Score=65, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6323217, Length=214, Percent_Identity=25.7009345794392, Blast_Score=62, Evalue=1e-10,
Organism=Drosophila melanogaster, GI281363262, Length=220, Percent_Identity=33.1818181818182, Blast_Score=87, Evalue=1e-17,
Organism=Drosophila melanogaster, GI24653245, Length=220, Percent_Identity=33.1818181818182, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI17136662, Length=216, Percent_Identity=28.2407407407407, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24659289, Length=219, Percent_Identity=27.8538812785388, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI85726357, Length=225, Percent_Identity=29.3333333333333, Blast_Score=68, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010230 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 29155; Mature: 29024

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATLKIQDLHVEIEGKEILKGVNLEISTGEIHAIMGPNGTGKSTLSSAIMGHPKYEVTQG
CCEEEEEEEEEEECCHHHHCCCCEEEECCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEC
TITLDGEDVLEMEVDERARAGLFLAMQYPSEISGVTNAEFIRAAINSRREEGDEIPVMQF
EEEECCCCCEEECHHHHHCCCEEEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHH
IRKLDAKMDILDMDEEMAERYLNEGFSGGEKKRNEILQLLMIEPKLAILDEIDSGLDIDA
HHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHH
LKVVSKGVNEMRGEGFGCLIITHYQRLLNYITPDFVHVMMQGKVVKEGGPELAKRLEAEG
HHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCHHHHHHHHCCEEEECCCHHHHHHHHCCC
YDWIKQELGIELEEEEAVDQQ
HHHHHHHHCCEECHHHCCCCC
>Mature Secondary Structure 
ATLKIQDLHVEIEGKEILKGVNLEISTGEIHAIMGPNGTGKSTLSSAIMGHPKYEVTQG
CEEEEEEEEEEECCHHHHCCCCEEEECCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEC
TITLDGEDVLEMEVDERARAGLFLAMQYPSEISGVTNAEFIRAAINSRREEGDEIPVMQF
EEEECCCCCEEECHHHHHCCCEEEEEECCHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHH
IRKLDAKMDILDMDEEMAERYLNEGFSGGEKKRNEILQLLMIEPKLAILDEIDSGLDIDA
HHHHCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHH
LKVVSKGVNEMRGEGFGCLIITHYQRLLNYITPDFVHVMMQGKVVKEGGPELAKRLEAEG
HHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHCHHHHHHHHCCEEEECCCHHHHHHHHCCC
YDWIKQELGIELEEEEAVDQQ
HHHHHHHHCCEECHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 9298659 [H]