Click here to switch to the map view.

The map label for this gene is ydiM [H]

Identifier: 226224845

GI number: 226224845

Start: 2334307

End: 2335515

Strand: Direct

Name: ydiM [H]

Synonym: Lm4b_02264

Alternate gene names: 226224845

Gene position: 2334307-2335515 (Clockwise)

Preceding gene: 226224844

Following gene: 226224846

Centisome position: 80.14

GC content: 38.05

Gene sequence:

>1209_bases
ATGAACGCAAAAAGATTTTATCCAACAGCAATAGCACTTTATTTTACTTATTTTATTCACGGTATTGGGGTATCCATTCT
TGGCCAATACAAACAAGATTTCGCCGGAGTATGGGGAGCAGATAAGCTTTCTGATGGCACATTTGACGTAAGCATGGTTA
TCGCAGTTATCGCAGCACTTGGTTTAGGTCGCTTGCTGACATTACCAATTTCTGGACCCTTCTCAGATAAATTTGGGCGT
AAACCGTCCGCATTAATCGGTGTTGCGTTATACGCAGTTTATTTCATCGGTCTTGCTTTTGCACCGAATATGTATATCGC
TTACGCTTTCGCTTTTGTAGGAGGAGCGGCGAACTCATTCTTAGACACAGCCGTAACACCATCAGTTCTAGAAATTTTCA
CAAAAAATGGCGCCATTGCCAATATGTTTACTAAATTCTCTATCTCTATCGGACAATTTGTATTACCTTTCGCAATCGGT
ATGGTTGCGGCGGCAAATATGTCATTCCGCACACTATTCGTTATTACAATGGTCTTAATCGTTATTGATGGCTTAATCAT
CGCATTTATGCCATTCCCTCCAATGAACAATAATGTTGGCGGCGAAAAAGCAAAACCAGAAAAAATGAAATTCAATGCAA
CTAGTTGGGCTATAATCGGTATTGGTTTTACGTGTACATCCACTTTCCAACTATGGCTAAACTGCAACCAAGAACTTGGA
AAATTATACGGTATGGCTGATCCAAGTAAAATTCAATCATTCTACTCACTAGGAACAATGTGCGCAATTCTAATTACCGC
TGTTCTCGTGAAAAAATTTATTTTGCCAGTCCGAATTCTAATCCTATATCCAGCAATTGCCACTTTAATGTTGCTAATTA
TTTATATCGTACAAACACCAACCATTTGCTTAATTGGTGGATTTGTTATCGGATACGCTGCTGCTGGGGGAGTTCTACAA
CTAGCTGTATCAACTGCCAATGAGTTTTTCCCAACAAACAAAGGGAAAATCACTTCAATTGTCATGATTTCTTCCAGTCT
AGCAAACTATATTGTTTTAAACGTTGCAAGTTATATTACTAAAGCTGGTGGTATCGAAGGTCCGAAATATGTGTTATTAT
TCAATGTAGCGATAACTGTTATTGGTATCCTACTAGCAATCTTTGTCAATATGCGTTACAAAAACGAATCTAAAATTGCT
ACTAAATAA

Upstream 100 bases:

>100_bases
AAGCATACAAATTGTTTACTGGTAAAGATATGCCAGTTTCAGAAGTAAAGAATCTATATTTCAACTAATAAATTCATCAG
GATTTCGAGAGGAGAAAAAA

Downstream 100 bases:

>100_bases
TTTATTATTCAACTGAGCATTTATGATGCTCAGTTGAACTTACATATCATTTGTGAAGTAAAGCACAAACTTATGTATTT
TATCTATATGAACTCACTGA

Product: transport system permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MNAKRFYPTAIALYFTYFIHGIGVSILGQYKQDFAGVWGADKLSDGTFDVSMVIAVIAALGLGRLLTLPISGPFSDKFGR
KPSALIGVALYAVYFIGLAFAPNMYIAYAFAFVGGAANSFLDTAVTPSVLEIFTKNGAIANMFTKFSISIGQFVLPFAIG
MVAAANMSFRTLFVITMVLIVIDGLIIAFMPFPPMNNNVGGEKAKPEKMKFNATSWAIIGIGFTCTSTFQLWLNCNQELG
KLYGMADPSKIQSFYSLGTMCAILITAVLVKKFILPVRILILYPAIATLMLLIIYIVQTPTICLIGGFVIGYAAAGGVLQ
LAVSTANEFFPTNKGKITSIVMISSSLANYIVLNVASYITKAGGIEGPKYVLLFNVAITVIGILLAIFVNMRYKNESKIA
TK

Sequences:

>Translated_402_residues
MNAKRFYPTAIALYFTYFIHGIGVSILGQYKQDFAGVWGADKLSDGTFDVSMVIAVIAALGLGRLLTLPISGPFSDKFGR
KPSALIGVALYAVYFIGLAFAPNMYIAYAFAFVGGAANSFLDTAVTPSVLEIFTKNGAIANMFTKFSISIGQFVLPFAIG
MVAAANMSFRTLFVITMVLIVIDGLIIAFMPFPPMNNNVGGEKAKPEKMKFNATSWAIIGIGFTCTSTFQLWLNCNQELG
KLYGMADPSKIQSFYSLGTMCAILITAVLVKKFILPVRILILYPAIATLMLLIIYIVQTPTICLIGGFVIGYAAAGGVLQ
LAVSTANEFFPTNKGKITSIVMISSSLANYIVLNVASYITKAGGIEGPKYVLLFNVAITVIGILLAIFVNMRYKNESKIA
TK
>Mature_402_residues
MNAKRFYPTAIALYFTYFIHGIGVSILGQYKQDFAGVWGADKLSDGTFDVSMVIAVIAALGLGRLLTLPISGPFSDKFGR
KPSALIGVALYAVYFIGLAFAPNMYIAYAFAFVGGAANSFLDTAVTPSVLEIFTKNGAIANMFTKFSISIGQFVLPFAIG
MVAAANMSFRTLFVITMVLIVIDGLIIAFMPFPPMNNNVGGEKAKPEKMKFNATSWAIIGIGFTCTSTFQLWLNCNQELG
KLYGMADPSKIQSFYSLGTMCAILITAVLVKKFILPVRILILYPAIATLMLLIIYIVQTPTICLIGGFVIGYAAAGGVLQ
LAVSTANEFFPTNKGKITSIVMISSSLANYIVLNVASYITKAGGIEGPKYVLLFNVAITVIGILLAIFVNMRYKNESKIA
TK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787981, Length=406, Percent_Identity=31.2807881773399, Blast_Score=191, Evalue=6e-50,
Organism=Escherichia coli, GI226510946, Length=392, Percent_Identity=31.3775510204082, Blast_Score=183, Evalue=2e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196
- InterPro:   IPR005829 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 43288; Mature: 43288

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAKRFYPTAIALYFTYFIHGIGVSILGQYKQDFAGVWGADKLSDGTFDVSMVIAVIAAL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
GLGRLLTLPISGPFSDKFGRKPSALIGVALYAVYFIGLAFAPNMYIAYAFAFVGGAANSF
CCCCEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHH
LDTAVTPSVLEIFTKNGAIANMFTKFSISIGQFVLPFAIGMVAAANMSFRTLFVITMVLI
HHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
VIDGLIIAFMPFPPMNNNVGGEKAKPEKMKFNATSWAIIGIGFTCTSTFQLWLNCNQELG
HHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCHHHHHHHHEECCCHHHH
KLYGMADPSKIQSFYSLGTMCAILITAVLVKKFILPVRILILYPAIATLMLLIIYIVQTP
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TICLIGGFVIGYAAAGGVLQLAVSTANEFFPTNKGKITSIVMISSSLANYIVLNVASYIT
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHH
KAGGIEGPKYVLLFNVAITVIGILLAIFVNMRYKNESKIATK
HCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MNAKRFYPTAIALYFTYFIHGIGVSILGQYKQDFAGVWGADKLSDGTFDVSMVIAVIAAL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHH
GLGRLLTLPISGPFSDKFGRKPSALIGVALYAVYFIGLAFAPNMYIAYAFAFVGGAANSF
CCCCEEEEECCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHH
LDTAVTPSVLEIFTKNGAIANMFTKFSISIGQFVLPFAIGMVAAANMSFRTLFVITMVLI
HHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
VIDGLIIAFMPFPPMNNNVGGEKAKPEKMKFNATSWAIIGIGFTCTSTFQLWLNCNQELG
HHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCHHHHHHHHEECCCHHHH
KLYGMADPSKIQSFYSLGTMCAILITAVLVKKFILPVRILILYPAIATLMLLIIYIVQTP
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TICLIGGFVIGYAAAGGVLQLAVSTANEFFPTNKGKITSIVMISSSLANYIVLNVASYIT
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHH
KAGGIEGPKYVLLFNVAITVIGILLAIFVNMRYKNESKIATK
HCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]