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The map label for this gene is ynbA [H]

Identifier: 226223898

GI number: 226223898

Start: 1308342

End: 1309565

Strand: Direct

Name: ynbA [H]

Synonym: Lm4b_01305

Alternate gene names: 226223898

Gene position: 1308342-1309565 (Clockwise)

Preceding gene: 226223897

Following gene: 226223899

Centisome position: 44.92

GC content: 37.34

Gene sequence:

>1224_bases
GTGGAAAGAGAAAAAATAATACTTGTAGGCGTGATTTTGCCAAATAAAACAGAAGAAGCTTTCTGGAATTCCATGAATGA
ACTACATAGCTTAGCTAAAACGGCAAACGGTGAAGTAGTAGATGAATTAATTCAAAAATTAGAACGAGTAAATCAAGCAT
CGTTCATTGGTTCTGGTAAACTGGAAGAGCTTGCTACTTTAGTGGAAATGCATGAGGCGGACGTTGTTATATTTAATAGT
GAACTTAGTGCAACTCAAGTGCGCAATATTTCTAAGGCGGTTGATGCGCGAATAATTGACCGAACACAGTTAATCTTAGA
CATATTTGCCATGCGCGCAAAATCCAAAGAAGGAAAACTGCAAGTCGCATACGCGCAATATAAATATCTGTTACCAAGAC
TTAGCGGACAAGGTGTTTCCTTATCAAAACTTGGAGGAGGTATTGGTTCAAGAGGGCCTGGTGAATCCAAACTAGAAATG
GACAAACGCCATATTCGCGAAAAAATGCATGATATCAAAGCGCAATTAACACATGTTGAACAACACCGCAAGCGAATCAT
TGAACGAAGAAATATACAATCCGTTTTTCGGTTTGGTTTAATTGGTTACACAAATGCAGGGAAATCAACTATTTTCAACC
GTCTAACGAATGAAACAACATTACAAGAAGATAAATTATTTGCAACGCTTGACCCAACCACACGAAAAATTCGCTTTTCG
GGTGGATTTCAAGCGCTTTTGACAGATACAGTTGGTTTTATTCAAGATTTGCCAACGACTTTAATTGCAGCTTTTCGCTC
TACTTTAGAGGAAACTGCCAATGTAGATGTGTTAATTCATGTAGTTGATGCATCAAATCCAGACTATTTGCAACACGAAA
CAACGGTAATTTCTTTATTAGAGGAACTTGAAATGAACCATCTGCCGACACTAGTCATTTACAATAAAATGGATCATGCA
CCAGCCACGTTTGTACCCGATCAACCAGAAAATTTGCTTATATCAGCTTTAGATCAAGAGGCTCCAGATACGATTAAACA
GCGAATGATCCAATTAATTGAAAAAAATTGGGCTTTCTTTACACTAGAACTTTCAGAAGAAAAAGGAAAAGAATTAGCGC
AAATAAAGCAACAAGCGTGGGTAACGAAACTAGAATATATTGAAAGTAAACAGAGTTACCACATAGAGGGGTACAAACCG
AGAAAGGAGCTAAATAATGAATAA

Upstream 100 bases:

>100_bases
TGAAAGGCAGGGAACTCGCTTTTTTTGCGATGTTTCATGTCTTTTTTTTATGCAGAAAATATGCTACGATTAGTCTTGTC
TGAAAAAGGGAGAAATGCAT

Downstream 100 bases:

>100_bases
TATTCAAGCGATACGAAAAAAGGTGGAAACACAAATTGATGATTTGCAAAATAAAACAGACGAAATTGCTGAATTTAATC
AAGCGAAAGTTTTAGATGCG

Product: GTP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MEREKIILVGVILPNKTEEAFWNSMNELHSLAKTANGEVVDELIQKLERVNQASFIGSGKLEELATLVEMHEADVVIFNS
ELSATQVRNISKAVDARIIDRTQLILDIFAMRAKSKEGKLQVAYAQYKYLLPRLSGQGVSLSKLGGGIGSRGPGESKLEM
DKRHIREKMHDIKAQLTHVEQHRKRIIERRNIQSVFRFGLIGYTNAGKSTIFNRLTNETTLQEDKLFATLDPTTRKIRFS
GGFQALLTDTVGFIQDLPTTLIAAFRSTLEETANVDVLIHVVDASNPDYLQHETTVISLLEELEMNHLPTLVIYNKMDHA
PATFVPDQPENLLISALDQEAPDTIKQRMIQLIEKNWAFFTLELSEEKGKELAQIKQQAWVTKLEYIESKQSYHIEGYKP
RKELNNE

Sequences:

>Translated_407_residues
MEREKIILVGVILPNKTEEAFWNSMNELHSLAKTANGEVVDELIQKLERVNQASFIGSGKLEELATLVEMHEADVVIFNS
ELSATQVRNISKAVDARIIDRTQLILDIFAMRAKSKEGKLQVAYAQYKYLLPRLSGQGVSLSKLGGGIGSRGPGESKLEM
DKRHIREKMHDIKAQLTHVEQHRKRIIERRNIQSVFRFGLIGYTNAGKSTIFNRLTNETTLQEDKLFATLDPTTRKIRFS
GGFQALLTDTVGFIQDLPTTLIAAFRSTLEETANVDVLIHVVDASNPDYLQHETTVISLLEELEMNHLPTLVIYNKMDHA
PATFVPDQPENLLISALDQEAPDTIKQRMIQLIEKNWAFFTLELSEEKGKELAQIKQQAWVTKLEYIESKQSYHIEGYKP
RKELNNE
>Mature_407_residues
MEREKIILVGVILPNKTEEAFWNSMNELHSLAKTANGEVVDELIQKLERVNQASFIGSGKLEELATLVEMHEADVVIFNS
ELSATQVRNISKAVDARIIDRTQLILDIFAMRAKSKEGKLQVAYAQYKYLLPRLSGQGVSLSKLGGGIGSRGPGESKLEM
DKRHIREKMHDIKAQLTHVEQHRKRIIERRNIQSVFRFGLIGYTNAGKSTIFNRLTNETTLQEDKLFATLDPTTRKIRFS
GGFQALLTDTVGFIQDLPTTLIAAFRSTLEETANVDVLIHVVDASNPDYLQHETTVISLLEELEMNHLPTLVIYNKMDHA
PATFVPDQPENLLISALDQEAPDTIKQRMIQLIEKNWAFFTLELSEEKGKELAQIKQQAWVTKLEYIESKQSYHIEGYKP
RKELNNE

Specific function: Unknown

COG id: COG2262

COG function: function code R; GTPases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI310133116, Length=249, Percent_Identity=31.3253012048193, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI310133118, Length=265, Percent_Identity=30.9433962264151, Blast_Score=117, Evalue=3e-26,
Organism=Homo sapiens, GI310124269, Length=241, Percent_Identity=30.7053941908714, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI310124267, Length=241, Percent_Identity=30.7053941908714, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI310124171, Length=241, Percent_Identity=30.7053941908714, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI310124169, Length=241, Percent_Identity=30.7053941908714, Blast_Score=110, Evalue=2e-24,
Organism=Escherichia coli, GI1790615, Length=404, Percent_Identity=36.1386138613861, Blast_Score=239, Evalue=2e-64,
Organism=Caenorhabditis elegans, GI17561038, Length=272, Percent_Identity=31.25, Blast_Score=122, Evalue=4e-28,
Organism=Drosophila melanogaster, GI24650079, Length=307, Percent_Identity=31.5960912052117, Blast_Score=127, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016496
- InterPro:   IPR006073
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 46227; Mature: 46227

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEREKIILVGVILPNKTEEAFWNSMNELHSLAKTANGEVVDELIQKLERVNQASFIGSGK
CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
LEELATLVEMHEADVVIFNSELSATQVRNISKAVDARIIDRTQLILDIFAMRAKSKEGKL
HHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
QVAYAQYKYLLPRLSGQGVSLSKLGGGIGSRGPGESKLEMDKRHIREKMHDIKAQLTHVE
EEEHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QHRKRIIERRNIQSVFRFGLIGYTNAGKSTIFNRLTNETTLQEDKLFATLDPTTRKIRFS
HHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCCCCCCCEEEEECCCCEEEEEC
GGFQALLTDTVGFIQDLPTTLIAAFRSTLEETANVDVLIHVVDASNPDYLQHETTVISLL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHH
EELEMNHLPTLVIYNKMDHAPATFVPDQPENLLISALDQEAPDTIKQRMIQLIEKNWAFF
HHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEE
TLELSEEKGKELAQIKQQAWVTKLEYIESKQSYHIEGYKPRKELNNE
EEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHCCCC
>Mature Secondary Structure
MEREKIILVGVILPNKTEEAFWNSMNELHSLAKTANGEVVDELIQKLERVNQASFIGSGK
CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCC
LEELATLVEMHEADVVIFNSELSATQVRNISKAVDARIIDRTQLILDIFAMRAKSKEGKL
HHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
QVAYAQYKYLLPRLSGQGVSLSKLGGGIGSRGPGESKLEMDKRHIREKMHDIKAQLTHVE
EEEHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
QHRKRIIERRNIQSVFRFGLIGYTNAGKSTIFNRLTNETTLQEDKLFATLDPTTRKIRFS
HHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHCCCCCCCCCCEEEEECCCCEEEEEC
GGFQALLTDTVGFIQDLPTTLIAAFRSTLEETANVDVLIHVVDASNPDYLQHETTVISLL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHH
EELEMNHLPTLVIYNKMDHAPATFVPDQPENLLISALDQEAPDTIKQRMIQLIEKNWAFF
HHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEE
TLELSEEKGKELAQIKQQAWVTKLEYIESKQSYHIEGYKPRKELNNE
EEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]