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The map label for this gene is ynbB [H]

Identifier: 226223899

GI number: 226223899

Start: 1309558

End: 1310784

Strand: Direct

Name: ynbB [H]

Synonym: Lm4b_01306

Alternate gene names: 226223899

Gene position: 1309558-1310784 (Clockwise)

Preceding gene: 226223898

Following gene: 226223900

Centisome position: 44.96

GC content: 39.28

Gene sequence:

>1227_bases
ATGAATAATATTCAAGCGATACGAAAAAAGGTGGAAACACAAATTGATGATTTGCAAAATAAAACAGACGAAATTGCTGA
ATTTAATCAAGCGAAAGTTTTAGATGCGTTTCAAGAGAATAAAGTGAGTGATTTTCATTTTCATCCTTCCACTGGGTATG
GTTATGATGATGAAGGTAGAGATACATTAGAACGTGTGTATGCGACTGTATTTAAGACAGAGGCGGCCCTGGTTCGTCCA
CAAATAATTTCAGGAACCCATGCAATTTCAACCGTATTATTTGGCATCCTTCGCCCGGATGATGAATTACTTTATATTAC
TGGTCAACCCTATGATACGTTAGAAGAAATTGTAGGAATACGAAAGCAAGGACAGGGCTCTTTAAAAGATTTTCATATTG
GTTATAGCTCTGTGCCGCTTCTGGAAAATGGTGATGTAGACTTTCCAAGAATAGCGAAAAAAATGACGCCAAAAACAAAG
ATGATTGGAATTCAGCGTTCACGAGGTTATGCGGATAGACCTTCTTTTACAATAGAAAAGATTAAAGAAATGATTGTATT
TGTAAAAAATATCAATCCGGAAGTAATTGTTTTTGTAGATAACTGTTACGGAGAATTCGTGGAATATCAGGAGCCGCCAG
AAGTTGGAGCAGATATTATCGCGGGTTCATTAATCAAAAATCCTGGTGGTGGCTTAGCGAAAACAGGCGGTTATATTGCA
GGAAAAGAAGCATTAGTAGATTTATGTGGTTATCGCTTAACTACACCTGGAATTGGCAGAGAAGCAGGTGCATCACTCTA
TAGTTTATTAGAAATGTATCAAGGTTTCTTTTTAGCTCCTCATGTGACAGCTCAGGCAATTAAAGGAGCACGATTCACAG
CCGCCATGCTTGCGGAGTTTGGTGTAGAAGCTGACCCAGTTTGGGATGCGCCAAGAACTGATTTAATTCAAAGCGTTTCC
TTCCATAACAAAGAGAAGATGGTTGCATTTGCGCAAGCTATTCAAGCAGCCTCGCCGGTTAATGCGCATGTTTTGCCAAT
CGGTGCATATATGCCAGGTTATGAAGATGACGTGATAATGGCAGCTGGGACATTTATACAAGGCGCGAGTTTGGAACTAA
CAGCAGATGGACCTATTAGAGAACCTTATCAACTCTATGTTCAAGGCGGTTTGACCTATGAACACATCAAAATTGCAGTT
ACTCGAGCAATCCAAAAAATAGTATAA

Upstream 100 bases:

>100_bases
GCGCAAATAAAGCAACAAGCGTGGGTAACGAAACTAGAATATATTGAAAGTAAACAGAGTTACCACATAGAGGGGTACAA
ACCGAGAAAGGAGCTAAATA

Downstream 100 bases:

>100_bases
AAAAGTAACATTTATTTGCAAAAAAATATTTTTAATTTTTACCGCGATGGTTTTAATCGCGGTTTTTTTATGCGGAATAC
ATTGGTATACAACGCTTTAA

Product: aluminum resistance protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MNNIQAIRKKVETQIDDLQNKTDEIAEFNQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKTEAALVRP
QIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTK
MIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIA
GKEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLAPHVTAQAIKGARFTAAMLAEFGVEADPVWDAPRTDLIQSVS
FHNKEKMVAFAQAIQAASPVNAHVLPIGAYMPGYEDDVIMAAGTFIQGASLELTADGPIREPYQLYVQGGLTYEHIKIAV
TRAIQKIV

Sequences:

>Translated_408_residues
MNNIQAIRKKVETQIDDLQNKTDEIAEFNQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKTEAALVRP
QIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTK
MIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIA
GKEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLAPHVTAQAIKGARFTAAMLAEFGVEADPVWDAPRTDLIQSVS
FHNKEKMVAFAQAIQAASPVNAHVLPIGAYMPGYEDDVIMAAGTFIQGASLELTADGPIREPYQLYVQGGLTYEHIKIAV
TRAIQKIV
>Mature_408_residues
MNNIQAIRKKVETQIDDLQNKTDEIAEFNQAKVLDAFQENKVSDFHFHPSTGYGYDDEGRDTLERVYATVFKTEAALVRP
QIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTK
MIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIA
GKEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLAPHVTAQAIKGARFTAAMLAEFGVEADPVWDAPRTDLIQSVS
FHNKEKMVAFAQAIQAASPVNAHVLPIGAYMPGYEDDVIMAAGTFIQGASLELTADGPIREPYQLYVQGGLTYEHIKIAV
TRAIQKIV

Specific function: Unknown

COG id: COG4100

COG function: function code P; Cystathionine beta-lyase family protein involved in aluminum resistance

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009651
- InterPro:   IPR015424
- InterPro:   IPR015421 [H]

Pfam domain/function: PF06838 Alum_res [H]

EC number: NA

Molecular weight: Translated: 44880; Mature: 44880

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNIQAIRKKVETQIDDLQNKTDEIAEFNQAKVLDAFQENKVSDFHFHPSTGYGYDDEGR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCH
DTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGI
HHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHH
RKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEK
HHCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCHHEEEEECCCCCCCCCCHHHHH
IKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIA
HHHHHHHHCCCCCCEEEEEECCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEE
GKEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLAPHVTAQAIKGARFTAAMLAEF
CHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHCCEEECCCHHHHHHCCCHHHHHHHHHH
GVEADPVWDAPRTDLIQSVSFHNKEKMVAFAQAIQAASPVNAHVLPIGAYMPGYEDDVIM
CCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEE
AAGTFIQGASLELTADGPIREPYQLYVQGGLTYEHIKIAVTRAIQKIV
EECCEECCCEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MNNIQAIRKKVETQIDDLQNKTDEIAEFNQAKVLDAFQENKVSDFHFHPSTGYGYDDEGR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCH
DTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGI
HHHHHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHH
RKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIEK
HHCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHCCCCHHEEEEECCCCCCCCCCHHHHH
IKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIA
HHHHHHHHCCCCCCEEEEEECCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEE
GKEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLAPHVTAQAIKGARFTAAMLAEF
CHHHHHHHHCCEECCCCCCHHHHHHHHHHHHHHCCEEECCCHHHHHHCCCHHHHHHHHHH
GVEADPVWDAPRTDLIQSVSFHNKEKMVAFAQAIQAASPVNAHVLPIGAYMPGYEDDVIM
CCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEE
AAGTFIQGASLELTADGPIREPYQLYVQGGLTYEHIKIAVTRAIQKIV
EECCEECCCEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]