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The map label for this gene is cbiD

Identifier: 225852789

GI number: 225852789

Start: 1278919

End: 1280028

Strand: Direct

Name: cbiD

Synonym: BMEA_A1345

Alternate gene names: 225852789

Gene position: 1278919-1280028 (Clockwise)

Preceding gene: 225852784

Following gene: 225852790

Centisome position: 60.16

GC content: 59.82

Gene sequence:

>1110_bases
ATGAACGACGAAACTACCCCCGCAAATAAAAACCCTGAAAAAGCAGAACTTCGGTGCGGCTGGACGACGGGCGCTTGCGC
GACAGCCGCCACCAAGGCTGCCTTGACGGCGCTTATCACCGGCGAATTTCCCGATCCGGTGGGCATTATTCTGCCCAAGG
GCGAAGTACCCTATTTCCAGCTTGCCTATGAGGGACTGGGCGAAGGCTATGCCATGGCGGGCATCGTCAAGGATGCGGGC
GACGACCCGGATGTAACGCATGGCGCAACCATCATCTCGACGGTCTATCCCGCCCCGCCCGGCACCGGCATCATCTTTCG
CGCGGGCGAAGGCGTCGGCACGGTCACGCGCGAGGGGCTCGCCATCCCCACCCCCGGCGAGGCGGCGATCAACCCGGTTC
CACGCCGCATGATGACAGAAATATGTGAGGCAATATGCGCTGAATACGGCCTCCCCGCCGATCTCGTCATCACCATATCG
GTTCCTGGCGGCGAAGAAATCGCACAGAAAACATGGAACCCACGCCTCGGCATCATCGGCGGCATATCCATTTTGGGCAC
CACGGGCGTCGTGCATCCTTTCTCCTGTTCGGCATGGATCCATTCCATCCATCGCGGCATCGATGTTGCGCGCGCTGCCG
GGCAAAAACATGTTCTCGGCGCAACCGGCTCCACCTCAGAGGATGCCGCGCAGGCGCTCTATAATCTGCCCGATTTCGCC
ATTCTGGATATGGGCGATTTTGCAGGCGGCGTTCTCAAATACCTGCGCGAACACCCCATCGACAGGCTCACCATTGCGGG
CGGCTTTGCCAAGCTCACCAAACTTGCCCAAGGCGCGCTTGACCTCCATTCGTCGCGCTCACAGGTGGATAAGGGCTTTC
TCTGGCAGATTGCCGAACGCGCTGGCGCACCGGCAGACATGAAGGAGCGGATTCTCCTTGCGAACACGGCAATGGAAGTG
CTTGAATTGACTCAATCAATCGGCATCGACATTGCAGGGCCGATCGCGCTTGAAGCAAGGCAAACGGCGCTCAAAACCCT
GCGCGGCGCGCCAGTCGAAGTCGAGATTATCGTTACGGACCGCAAGGGAAACATTCTTGCCCGCGTCTGA

Upstream 100 bases:

>100_bases
TCGCGATCACACAGGCAGCCGCTTCGTCAGCTTTGCTCATACTCTACAACCACGTTCAATTTACTAGCCGCACAGCTATC
AGATACATTATAAGTCGTCC

Downstream 100 bases:

>100_bases
GCCAAAAATCCTCATCCTTGGCGGAACGGCGGAAGCAGCAAGCCTTGCCAGCGCCTTCACCGCCCTGCCGGTCGCGGCCA
TCACCTCGCTTGCGGGACGC

Product: cobalt-precorrin-6A synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 369

Protein sequence:

>369_residues
MNDETTPANKNPEKAELRCGWTTGACATAATKAALTALITGEFPDPVGIILPKGEVPYFQLAYEGLGEGYAMAGIVKDAG
DDPDVTHGATIISTVYPAPPGTGIIFRAGEGVGTVTREGLAIPTPGEAAINPVPRRMMTEICEAICAEYGLPADLVITIS
VPGGEEIAQKTWNPRLGIIGGISILGTTGVVHPFSCSAWIHSIHRGIDVARAAGQKHVLGATGSTSEDAAQALYNLPDFA
ILDMGDFAGGVLKYLREHPIDRLTIAGGFAKLTKLAQGALDLHSSRSQVDKGFLWQIAERAGAPADMKERILLANTAMEV
LELTQSIGIDIAGPIALEARQTALKTLRGAPVEVEIIVTDRKGNILARV

Sequences:

>Translated_369_residues
MNDETTPANKNPEKAELRCGWTTGACATAATKAALTALITGEFPDPVGIILPKGEVPYFQLAYEGLGEGYAMAGIVKDAG
DDPDVTHGATIISTVYPAPPGTGIIFRAGEGVGTVTREGLAIPTPGEAAINPVPRRMMTEICEAICAEYGLPADLVITIS
VPGGEEIAQKTWNPRLGIIGGISILGTTGVVHPFSCSAWIHSIHRGIDVARAAGQKHVLGATGSTSEDAAQALYNLPDFA
ILDMGDFAGGVLKYLREHPIDRLTIAGGFAKLTKLAQGALDLHSSRSQVDKGFLWQIAERAGAPADMKERILLANTAMEV
LELTQSIGIDIAGPIALEARQTALKTLRGAPVEVEIIVTDRKGNILARV
>Mature_369_residues
MNDETTPANKNPEKAELRCGWTTGACATAATKAALTALITGEFPDPVGIILPKGEVPYFQLAYEGLGEGYAMAGIVKDAG
DDPDVTHGATIISTVYPAPPGTGIIFRAGEGVGTVTREGLAIPTPGEAAINPVPRRMMTEICEAICAEYGLPADLVITIS
VPGGEEIAQKTWNPRLGIIGGISILGTTGVVHPFSCSAWIHSIHRGIDVARAAGQKHVLGATGSTSEDAAQALYNLPDFA
ILDMGDFAGGVLKYLREHPIDRLTIAGGFAKLTKLAQGALDLHSSRSQVDKGFLWQIAERAGAPADMKERILLANTAMEV
LELTQSIGIDIAGPIALEARQTALKTLRGAPVEVEIIVTDRKGNILARV

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CBID_BRUMB (C0RJR0)

Other databases:

- EMBL:   CP001488
- RefSeq:   YP_002733022.1
- GeneID:   7677072
- GenomeReviews:   CP001488_GR
- KEGG:   bmi:BMEA_A1345
- OMA:   RRGWTTG
- ProtClustDB:   PRK00075
- HAMAP:   MF_00787
- InterPro:   IPR002748
- PIRSF:   PIRSF026782
- TIGRFAMs:   TIGR00312

Pfam domain/function: PF01888 CbiD; SSF111342 Cbl_biosynth_CbiD

EC number: NA

Molecular weight: Translated: 38690; Mature: 38690

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDETTPANKNPEKAELRCGWTTGACATAATKAALTALITGEFPDPVGIILPKGEVPYFQ
CCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHEEECCCCCCCEEEEECCCCCEEE
LAYEGLGEGYAMAGIVKDAGDDPDVTHGATIISTVYPAPPGTGIIFRAGEGVGTVTREGL
EEHHHCCCCEEEEEEHHCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCHHCCCC
AIPTPGEAAINPVPRRMMTEICEAICAEYGLPADLVITISVPGGEEIAQKTWNPRLGIIG
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHCCCCCCEEEE
GISILGTTGVVHPFSCSAWIHSIHRGIDVARAAGQKHVLGATGSTSEDAAQALYNLPDFA
CHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEE
ILDMGDFAGGVLKYLREHPIDRLTIAGGFAKLTKLAQGALDLHSSRSQVDKGFLWQIAER
EEECCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
AGAPADMKERILLANTAMEVLELTQSIGIDIAGPIALEARQTALKTLRGAPVEVEIIVTD
CCCCCCHHHHEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEC
RKGNILARV
CCCCEEEEC
>Mature Secondary Structure
MNDETTPANKNPEKAELRCGWTTGACATAATKAALTALITGEFPDPVGIILPKGEVPYFQ
CCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHEEECCCCCCCEEEEECCCCCEEE
LAYEGLGEGYAMAGIVKDAGDDPDVTHGATIISTVYPAPPGTGIIFRAGEGVGTVTREGL
EEHHHCCCCEEEEEEHHCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCHHCCCC
AIPTPGEAAINPVPRRMMTEICEAICAEYGLPADLVITISVPGGEEIAQKTWNPRLGIIG
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHCCCCCCEEEE
GISILGTTGVVHPFSCSAWIHSIHRGIDVARAAGQKHVLGATGSTSEDAAQALYNLPDFA
CHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEE
ILDMGDFAGGVLKYLREHPIDRLTIAGGFAKLTKLAQGALDLHSSRSQVDKGFLWQIAER
EEECCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
AGAPADMKERILLANTAMEVLELTQSIGIDIAGPIALEARQTALKTLRGAPVEVEIIVTD
CCCCCCHHHHEEHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEC
RKGNILARV
CCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA