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The map label for this gene is radC [C]

Identifier: 225852775

GI number: 225852775

Start: 1263854

End: 1264603

Strand: Direct

Name: radC [C]

Synonym: BMEA_A1330

Alternate gene names: 225852775

Gene position: 1263854-1264603 (Clockwise)

Preceding gene: 225852774

Following gene: 225852776

Centisome position: 59.46

GC content: 60.27

Gene sequence:

>750_bases
ATGGCAAAGAAGAAGGATACGCCCGGAGATGGCGAATTTCCGGGCTTCAGCGACACGCTGCAACGCACACCGAAGCTGGA
GAAGCCTCATTATGCGGGGCATCGCGACCGGCTGAAGCAGCGCTTCCGGGATGCGCCGGACGCTCTCGCCGATTATGAAT
TGCTGGAGCTTCTCCTGTTCCGCGCCATCCGCCGCGCGGACACCAAGCCTATTGCCAAGGCGCTTCTCAACCGTTTCGGC
TCCATAGCCGAAGTTCTGACTGCGCCAGAGAATCTGATTGCCGAAATTCCGGGCGCTGGCCCCACCGTCGCGCTGGAACT
GAAACTCGTCGAAGCCATAGCCAAGCGCAGCGCCCGCAGCACCGTGATGGAGCGCGAAGTACTCGGCTCCTGGGACAAGG
TCATCAATTATTGCACCGCCGCCATGGCGTTTGAAACCCGCGAACAATTCCGCATCCTGTTCCTCGACAAGAAGAACAAG
CTCATAGCCGACGAAGTGCAGCAGACCGGCACTGTTGACCATACGCCCGTCTATCCGCGTGAGGTGGTGAAGCGGGCGCT
GGAGCTTTCCGCCACGGCCATCATCCTCGTCCATAACCACCCGTCCGGCGACCCGACGCCATCGCGCGCTGATATCGACA
TGACCAAGCAACTGGTCAACGCCGCCAAGGCACTCAATATTACCGTGCATGACCACGTCATCATCGGCAAGCACGGACAT
GCGAGCCTGCGCAGCCTGCGCCTGATCTGA

Upstream 100 bases:

>100_bases
ACGCTTTCTCCGGCCAATATCTTTGGCCCGCCTTCCATGCGGTGATTGAAAAGCGGCAATCACTTATTGTCTGATCTGTT
TTCGCGGGGGTTTAAACAGA

Downstream 100 bases:

>100_bases
TTTGCCTCTCCATAGTTACCAATCATTAAGCATGGTGCGAAGAAGGTTGCGCAATCTGCGAAGTTTGCTCGAATTTTCTT
AAATTTAGTCACAATTAAGA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 248

Protein sequence:

>249_residues
MAKKKDTPGDGEFPGFSDTLQRTPKLEKPHYAGHRDRLKQRFRDAPDALADYELLELLLFRAIRRADTKPIAKALLNRFG
SIAEVLTAPENLIAEIPGAGPTVALELKLVEAIAKRSARSTVMEREVLGSWDKVINYCTAAMAFETREQFRILFLDKKNK
LIADEVQQTGTVDHTPVYPREVVKRALELSATAIILVHNHPSGDPTPSRADIDMTKQLVNAAKALNITVHDHVIIGKHGH
ASLRSLRLI

Sequences:

>Translated_249_residues
MAKKKDTPGDGEFPGFSDTLQRTPKLEKPHYAGHRDRLKQRFRDAPDALADYELLELLLFRAIRRADTKPIAKALLNRFG
SIAEVLTAPENLIAEIPGAGPTVALELKLVEAIAKRSARSTVMEREVLGSWDKVINYCTAAMAFETREQFRILFLDKKNK
LIADEVQQTGTVDHTPVYPREVVKRALELSATAIILVHNHPSGDPTPSRADIDMTKQLVNAAKALNITVHDHVIIGKHGH
ASLRSLRLI
>Mature_248_residues
AKKKDTPGDGEFPGFSDTLQRTPKLEKPHYAGHRDRLKQRFRDAPDALADYELLELLLFRAIRRADTKPIAKALLNRFGS
IAEVLTAPENLIAEIPGAGPTVALELKLVEAIAKRSARSTVMEREVLGSWDKVINYCTAAMAFETREQFRILFLDKKNKL
IADEVQQTGTVDHTPVYPREVVKRALELSATAIILVHNHPSGDPTPSRADIDMTKQLVNAAKALNITVHDHVIIGKHGHA
SLRSLRLI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=197, Percent_Identity=32.48730964467, Blast_Score=123, Evalue=9e-30,
Organism=Escherichia coli, GI2367100, Length=107, Percent_Identity=50.4672897196262, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1788997, Length=101, Percent_Identity=49.5049504950495, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1788312, Length=100, Percent_Identity=50, Blast_Score=104, Evalue=5e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 27706; Mature: 27575

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKKKDTPGDGEFPGFSDTLQRTPKLEKPHYAGHRDRLKQRFRDAPDALADYELLELLLF
CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
RAIRRADTKPIAKALLNRFGSIAEVLTAPENLIAEIPGAGPTVALELKLVEAIAKRSARS
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHH
TVMEREVLGSWDKVINYCTAAMAFETREQFRILFLDKKNKLIADEVQQTGTVDHTPVYPR
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHCCCCCCCCCCHH
EVVKRALELSATAIILVHNHPSGDPTPSRADIDMTKQLVNAAKALNITVHDHVIIGKHGH
HHHHHHHHHCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHEEEEEECEEEEECCCC
ASLRSLRLI
HHHHHHCCC
>Mature Secondary Structure 
AKKKDTPGDGEFPGFSDTLQRTPKLEKPHYAGHRDRLKQRFRDAPDALADYELLELLLF
CCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
RAIRRADTKPIAKALLNRFGSIAEVLTAPENLIAEIPGAGPTVALELKLVEAIAKRSARS
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHH
TVMEREVLGSWDKVINYCTAAMAFETREQFRILFLDKKNKLIADEVQQTGTVDHTPVYPR
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHCCCCCCCCCCHH
EVVKRALELSATAIILVHNHPSGDPTPSRADIDMTKQLVNAAKALNITVHDHVIIGKHGH
HHHHHHHHHCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHEEEEEECEEEEECCCC
ASLRSLRLI
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA