| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is 222526129
Identifier: 222526129
GI number: 222526129
Start: 3570340
End: 3571902
Strand: Direct
Name: 222526129
Synonym: Chy400_2886
Alternate gene names: NA
Gene position: 3570340-3571902 (Clockwise)
Preceding gene: 222526128
Following gene: 222526130
Centisome position: 67.76
GC content: 57.97
Gene sequence:
>1563_bases GTGTCTGAGACCGAACCCTCACCTGTTCCGTCAACGCCAGGGCCGCGACTGAGTCGTGACACGTGGCTGTTGATCGGTGC GTTGGCTTTGCTCGGCCTTGGTGTTGCACTGACGTTCATCTTCTCACCCGGCACCAATGTCGTTGACACGACCCCTACGA TCACCTCACCGATAACTCGCCCGCCAACCCTGACTGCGTCGTACCCGGCACCTACCGGTGCTGCCGGTGGAGCGACAACC GGCCCGTATCCGGTTACTGTCCCAACGATTGATGTGGCTCAAACCCAGACCAGTGTGGTACTTGAGACGACTGCTCTGGC CGCTACGCTACAGGCTGAAATGACCGCTACTGCAAGCGGTGTACCGGCATACCCGGTTCCCGAAGGTACCCCACCGTCAG TGCCGACAATGGTGCCAACCGCTACAAATCCTCCACCAACTGTGCCTCCGCCGCCTACAGCACCACCACCGCCAACACCA ACCAGCGCCGATCTGATCATTGATGACAGTCCGACGAATCCGCCACCGCCAACCGCTACTCCTCTGCCAACGGCTACGCC GGCACCAACACCGATCCCGGCTCTGGTCTTGCGGGGTAGTACGCGCTGGGCCAGCGGGCAGGGGCCAATCGTTCTCAATC GCGATGTGCAGATTCCCCCTGGCAGTGAGTTGATCATTGAGCCGGGTGTGGAAGTACGTTTGGCGCCAGGCGTGTCAATC TATGTTGATGGTGGACGCATGATTGCCCTGGGCCAGGCCGGCAGTCCAGTGCGTTTTGTGGGCGCAACCGGCGCACGCTG GAGCGGTATCTTTGGCCGTCCTGGGAGCTTTATTGCACTGGAACATACCGAAATTCGCGGCGGCGGACTGGCGGGAACGG TGCTGGTCAGTGAAGAGGGAGGGCTGGTTGTTCGCGCTGCCCGTATTACCGACAATGGTGGTGGGGTGTTGGTTGTCGAC TCGCGGCTTGAACTCAGCCAGAGCGAAATTGCCGGCAATGACGTTCCTTTTGGGGCAGCCCTTGATGCGTCGTACAGTCG TGGGAATAGTGTCACGTTAACCGGTAATCGGATTGCCGGTAATTTGCTTAGCGCGGGCGCTCCAATGGTGCGAATTGCGA ATCAAAATGCGCGCGACACCTTAATCCTCACGATTGAAAGCAATCTCTTTCGGGGTGGTAGTGTCAATCTCCAGCTTACG ACCAACGGTATCTTGCAGGGAACGATCACCTGCAATGCCTTAATCGGCGGCGATTTGGGATTTGGTCTGCGGAGTGAAAC TCTGCAAGTAGCACCTGATGGTGGCTTCCTGATGCCGCTGCGAATTGAACAGAATCTCCTGGAAGGCCATACACCGGTTA TTCGTCCAACCTATCTCACCTTTGGCATCGGTCGTGGGGCAGCCAGTGAAGTTGCATTGGATATGCGCAATAACTGGTGG GGGAATGCGTCTGGTCCGTATGAACCAGATGCCAACCCGCAAGGGATTGGTGATGCAGTCGGAAGTAACATTTCCTTTGC TCCCTGGCTGACAAGCCGCCCTGGTTGTGTGCCGGCACCTTAA
Upstream 100 bases:
>100_bases TGCCGGGTCTTTGTCTGTTGTCGCTACTACCCGCACGCAGCCCTTGCCACGATGTGATAAGATACACGAGAGACGTTTGC ATTGTAGCGGAGGCCAGTCT
Downstream 100 bases:
>100_bases TTGAAGGGAGACTCTGTTGATTGCACGAATGGCTCGTCCACTGATCTTGGTGGTTGTGATAATGCTTGTGGCGTGTACGG CTTCAGCGCCGGTAGCCGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 520; Mature: 519
Protein sequence:
>520_residues MSETEPSPVPSTPGPRLSRDTWLLIGALALLGLGVALTFIFSPGTNVVDTTPTITSPITRPPTLTASYPAPTGAAGGATT GPYPVTVPTIDVAQTQTSVVLETTALAATLQAEMTATASGVPAYPVPEGTPPSVPTMVPTATNPPPTVPPPPTAPPPPTP TSADLIIDDSPTNPPPPTATPLPTATPAPTPIPALVLRGSTRWASGQGPIVLNRDVQIPPGSELIIEPGVEVRLAPGVSI YVDGGRMIALGQAGSPVRFVGATGARWSGIFGRPGSFIALEHTEIRGGGLAGTVLVSEEGGLVVRAARITDNGGGVLVVD SRLELSQSEIAGNDVPFGAALDASYSRGNSVTLTGNRIAGNLLSAGAPMVRIANQNARDTLILTIESNLFRGGSVNLQLT TNGILQGTITCNALIGGDLGFGLRSETLQVAPDGGFLMPLRIEQNLLEGHTPVIRPTYLTFGIGRGAASEVALDMRNNWW GNASGPYEPDANPQGIGDAVGSNISFAPWLTSRPGCVPAP
Sequences:
>Translated_520_residues MSETEPSPVPSTPGPRLSRDTWLLIGALALLGLGVALTFIFSPGTNVVDTTPTITSPITRPPTLTASYPAPTGAAGGATT GPYPVTVPTIDVAQTQTSVVLETTALAATLQAEMTATASGVPAYPVPEGTPPSVPTMVPTATNPPPTVPPPPTAPPPPTP TSADLIIDDSPTNPPPPTATPLPTATPAPTPIPALVLRGSTRWASGQGPIVLNRDVQIPPGSELIIEPGVEVRLAPGVSI YVDGGRMIALGQAGSPVRFVGATGARWSGIFGRPGSFIALEHTEIRGGGLAGTVLVSEEGGLVVRAARITDNGGGVLVVD SRLELSQSEIAGNDVPFGAALDASYSRGNSVTLTGNRIAGNLLSAGAPMVRIANQNARDTLILTIESNLFRGGSVNLQLT TNGILQGTITCNALIGGDLGFGLRSETLQVAPDGGFLMPLRIEQNLLEGHTPVIRPTYLTFGIGRGAASEVALDMRNNWW GNASGPYEPDANPQGIGDAVGSNISFAPWLTSRPGCVPAP >Mature_519_residues SETEPSPVPSTPGPRLSRDTWLLIGALALLGLGVALTFIFSPGTNVVDTTPTITSPITRPPTLTASYPAPTGAAGGATTG PYPVTVPTIDVAQTQTSVVLETTALAATLQAEMTATASGVPAYPVPEGTPPSVPTMVPTATNPPPTVPPPPTAPPPPTPT SADLIIDDSPTNPPPPTATPLPTATPAPTPIPALVLRGSTRWASGQGPIVLNRDVQIPPGSELIIEPGVEVRLAPGVSIY VDGGRMIALGQAGSPVRFVGATGARWSGIFGRPGSFIALEHTEIRGGGLAGTVLVSEEGGLVVRAARITDNGGGVLVVDS RLELSQSEIAGNDVPFGAALDASYSRGNSVTLTGNRIAGNLLSAGAPMVRIANQNARDTLILTIESNLFRGGSVNLQLTT NGILQGTITCNALIGGDLGFGLRSETLQVAPDGGFLMPLRIEQNLLEGHTPVIRPTYLTFGIGRGAASEVALDMRNNWWG NASGPYEPDANPQGIGDAVGSNISFAPWLTSRPGCVPAP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53077; Mature: 52946
Theoretical pI: Translated: 4.46; Mature: 4.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSETEPSPVPSTPGPRLSRDTWLLIGALALLGLGVALTFIFSPGTNVVDTTPTITSPITR CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCEEEEEEECCCCCCEECCCCCCCCCCC PPTLTASYPAPTGAAGGATTGPYPVTVPTIDVAQTQTSVVLETTALAATLQAEMTATASG CCEEEECCCCCCCCCCCCCCCCEEEEECEEECCCCCCEEEEEEHHHEEEHHHHEEECCCC VPAYPVPEGTPPSVPTMVPTATNPPPTVPPPPTAPPPPTPTSADLIIDDSPTNPPPPTAT CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC PLPTATPAPTPIPALVLRGSTRWASGQGPIVLNRDVQIPPGSELIIEPGVEVRLAPGVSI CCCCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEEEECCCEEE YVDGGRMIALGQAGSPVRFVGATGARWSGIFGRPGSFIALEHTEIRGGGLAGTVLVSEEG EECCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCC GLVVRAARITDNGGGVLVVDSRLELSQSEIAGNDVPFGAALDASYSRGNSVTLTGNRIAG CEEEEEEEEECCCCCEEEECCCCCCCHHHCCCCCCCCCEEECCCCCCCCEEEEECCHHCC NLLSAGAPMVRIANQNARDTLILTIESNLFRGGSVNLQLTTNGILQGTITCNALIGGDLG HHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEEEECCEEEEEEEEEEEECCCCC FGLRSETLQVAPDGGFLMPLRIEQNLLEGHTPVIRPTYLTFGIGRGAASEVALDMRNNWW CCCCCCEEEECCCCCEEEEEEECHHHHCCCCCEEEEEEEEEECCCCCCCCEEEECCCCCC GNASGPYEPDANPQGIGDAVGSNISFAPWLTSRPGCVPAP CCCCCCCCCCCCCCCCHHHHCCCCEECCCCCCCCCCCCCC >Mature Secondary Structure SETEPSPVPSTPGPRLSRDTWLLIGALALLGLGVALTFIFSPGTNVVDTTPTITSPITR CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCEEEEEEECCCCCCEECCCCCCCCCCC PPTLTASYPAPTGAAGGATTGPYPVTVPTIDVAQTQTSVVLETTALAATLQAEMTATASG CCEEEECCCCCCCCCCCCCCCCEEEEECEEECCCCCCEEEEEEHHHEEEHHHHEEECCCC VPAYPVPEGTPPSVPTMVPTATNPPPTVPPPPTAPPPPTPTSADLIIDDSPTNPPPPTAT CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCC PLPTATPAPTPIPALVLRGSTRWASGQGPIVLNRDVQIPPGSELIIEPGVEVRLAPGVSI CCCCCCCCCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCEEECCCCEEEECCCEEE YVDGGRMIALGQAGSPVRFVGATGARWSGIFGRPGSFIALEHTEIRGGGLAGTVLVSEEG EECCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCC GLVVRAARITDNGGGVLVVDSRLELSQSEIAGNDVPFGAALDASYSRGNSVTLTGNRIAG CEEEEEEEEECCCCCEEEECCCCCCCHHHCCCCCCCCCEEECCCCCCCCEEEEECCHHCC NLLSAGAPMVRIANQNARDTLILTIESNLFRGGSVNLQLTTNGILQGTITCNALIGGDLG HHHHCCCCEEEEECCCCCEEEEEEEECCCCCCCEEEEEEEECCEEEEEEEEEEEECCCCC FGLRSETLQVAPDGGFLMPLRIEQNLLEGHTPVIRPTYLTFGIGRGAASEVALDMRNNWW CCCCCCEEEECCCCCEEEEEEECHHHHCCCCCEEEEEEEEEECCCCCCCCEEEECCCCCC GNASGPYEPDANPQGIGDAVGSNISFAPWLTSRPGCVPAP CCCCCCCCCCCCCCCCHHHHCCCCEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA