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The map label for this gene is ctpA [H]

Identifier: 222525210

GI number: 222525210

Start: 2475509

End: 2476783

Strand: Reverse

Name: ctpA [H]

Synonym: Chy400_1950

Alternate gene names: 222525210

Gene position: 2476783-2475509 (Counterclockwise)

Preceding gene: 222525211

Following gene: 222525209

Centisome position: 47.01

GC content: 57.41

Gene sequence:

>1275_bases
ATGCTGGAACGTATGAGCTTTCGCTGGGTGTCGATATGGTTCCTGTGTGCGCTCTTGTGGGCATGCACACCTGCGTCAAC
GGAAGTCCGTGAACCTGCACCGACTCCTACTGCAATCTCACCAACACCGACCGCAGCGTTGATAACACCGACACCGCGAC
CACCGCTTGACGCGACGCTACGGCAGCAAATTTTCACAGAGGTCTGGACAACGATCAACGAACACTACCTTGATCCCACC
TTTAACGGTGTGGATTGGGCACGTGTGCGGGCAGAGTATGGAGCACGAGCGTTGGCCGCCGAGGATGATGCATCCTTCTT
CGCTGTCATCAGCGCTATGGTCAGACTACTCCGCGACGACCATTCACGTTTTGTGCCACCGCAGGCGGTGATCGCCGAAG
ATCAGTTGACCAGAGGACGTGAAGAGCAGGTTGGCATCGGTGTCAGTACTCTCCCGTTAAGCGACGGCTTGCTGATTCAG
CACGTCTTCCCCGACAGTCCGGCTGCCCGGGCCGGTTTGCAGCCACGTGATCGCATTGTGGCGATTGATGGCCTTTCATT
CAATCTGGGTTCAATTGAAGGTCCGTTGGGGAGTAGCGTGCGGTTGCTGATCGTACAGCCAGAAGGTGATTCGCGCGAAC
TTGAACTGATCCGAGAGCGGGTGGAAGGCCGTATCGAGCCACTGATACGTCGGCTGAGCGATGATGTGGCTTACGTCGGC
ATCAGTACGCTGTGGGTCAACGACATGCACGAGCAGGTAGCAACGGCGCTACAACGGCTGATGGCTGAGCGACCGCTGCG
GGGAGTGATCCTCGATCTGCGCAGCAATCCAGGCGGATGGCGCGACGTGCTCAGTGGTCTACTCGGTCATTTTGTCACCG
GTGATGTAGGTGCGTTCATCAGTCGCAAAGGAGCTACACCACTGGTGGTCACGGCGCGCAATCCCGATCTCCGGGGTTTG
CCGCTGGTGATCCTGGTTGATCGTGGTACTGCCTCATACGCCGAGCTACTGGCAGCCGTGTTACAGCAAGAGGCTCAGGC
TACAGTCATTGGGCGACCATCAGCCGGTAATACAGAAACCATTTACGCTTATGAGATTACCGGCGGTGCCCGGCTGTGGG
TTGCGCAAGAGGTGTTTCGCCTCAACGATGGTAGTGACCTTGAAGGCAAGGGTGTACAGCCGGATATTCAACCGTCCAGC
GATTGGACTCGCTTTCGCTTCGAGGCCGATCCGTGGATTGCACTGGCGCTCGACCGTATCAGAGAGGTAAGGTGA

Upstream 100 bases:

>100_bases
CGAGCAGGGTGGCGAAGGTAGCGGTGTAGCTGCCCGGCTGGCCGGCGAGGTATTGGCTGCTGCTTTCGCGTTAGAGTAAG
TAAATTGCTGGTTTGAATAC

Downstream 100 bases:

>100_bases
GCGGGTCGTTCTATCGTGGCAGGTAGCGCGGGGGCACGGCATGCCGTGCCCCTACTAATCACGTCAGCGGTGCTGCATCG
TTCTGGTGCAGTATCGGGGT

Product: peptidase S41

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MLERMSFRWVSIWFLCALLWACTPASTEVREPAPTPTAISPTPTAALITPTPRPPLDATLRQQIFTEVWTTINEHYLDPT
FNGVDWARVRAEYGARALAAEDDASFFAVISAMVRLLRDDHSRFVPPQAVIAEDQLTRGREEQVGIGVSTLPLSDGLLIQ
HVFPDSPAARAGLQPRDRIVAIDGLSFNLGSIEGPLGSSVRLLIVQPEGDSRELELIRERVEGRIEPLIRRLSDDVAYVG
ISTLWVNDMHEQVATALQRLMAERPLRGVILDLRSNPGGWRDVLSGLLGHFVTGDVGAFISRKGATPLVVTARNPDLRGL
PLVILVDRGTASYAELLAAVLQQEAQATVIGRPSAGNTETIYAYEITGGARLWVAQEVFRLNDGSDLEGKGVQPDIQPSS
DWTRFRFEADPWIALALDRIREVR

Sequences:

>Translated_424_residues
MLERMSFRWVSIWFLCALLWACTPASTEVREPAPTPTAISPTPTAALITPTPRPPLDATLRQQIFTEVWTTINEHYLDPT
FNGVDWARVRAEYGARALAAEDDASFFAVISAMVRLLRDDHSRFVPPQAVIAEDQLTRGREEQVGIGVSTLPLSDGLLIQ
HVFPDSPAARAGLQPRDRIVAIDGLSFNLGSIEGPLGSSVRLLIVQPEGDSRELELIRERVEGRIEPLIRRLSDDVAYVG
ISTLWVNDMHEQVATALQRLMAERPLRGVILDLRSNPGGWRDVLSGLLGHFVTGDVGAFISRKGATPLVVTARNPDLRGL
PLVILVDRGTASYAELLAAVLQQEAQATVIGRPSAGNTETIYAYEITGGARLWVAQEVFRLNDGSDLEGKGVQPDIQPSS
DWTRFRFEADPWIALALDRIREVR
>Mature_424_residues
MLERMSFRWVSIWFLCALLWACTPASTEVREPAPTPTAISPTPTAALITPTPRPPLDATLRQQIFTEVWTTINEHYLDPT
FNGVDWARVRAEYGARALAAEDDASFFAVISAMVRLLRDDHSRFVPPQAVIAEDQLTRGREEQVGIGVSTLPLSDGLLIQ
HVFPDSPAARAGLQPRDRIVAIDGLSFNLGSIEGPLGSSVRLLIVQPEGDSRELELIRERVEGRIEPLIRRLSDDVAYVG
ISTLWVNDMHEQVATALQRLMAERPLRGVILDLRSNPGGWRDVLSGLLGHFVTGDVGAFISRKGATPLVVTARNPDLRGL
PLVILVDRGTASYAELLAAVLQQEAQATVIGRPSAGNTETIYAYEITGGARLWVAQEVFRLNDGSDLEGKGVQPDIQPSS
DWTRFRFEADPWIALALDRIREVR

Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]

COG id: COG0793

COG function: function code M; Periplasmic protease

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PDZ (DHR) domain [H]

Homologues:

Organism=Escherichia coli, GI1788134, Length=374, Percent_Identity=28.0748663101604, Blast_Score=81, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001478
- InterPro:   IPR005151
- InterPro:   IPR004447 [H]

Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]

EC number: =3.4.21.102 [H]

Molecular weight: Translated: 46720; Mature: 46720

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: PS50106 PDZ

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLERMSFRWVSIWFLCALLWACTPASTEVREPAPTPTAISPTPTAALITPTPRPPLDATL
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHH
RQQIFTEVWTTINEHYLDPTFNGVDWARVRAEYGARALAAEDDASFFAVISAMVRLLRDD
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHH
HSRFVPPQAVIAEDQLTRGREEQVGIGVSTLPLSDGLLIQHVFPDSPAARAGLQPRDRIV
HHCCCCCHHHHCCHHHHCCCCHHHCCCEEECCCCCCEEEEEECCCCCHHHCCCCCCCCEE
AIDGLSFNLGSIEGPLGSSVRLLIVQPEGDSRELELIRERVEGRIEPLIRRLSDDVAYVG
EEECCEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
ISTLWVNDMHEQVATALQRLMAERPLRGVILDLRSNPGGWRDVLSGLLGHFVTGDVGAFI
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHH
SRKGATPLVVTARNPDLRGLPLVILVDRGTASYAELLAAVLQQEAQATVIGRPSAGNTET
HCCCCCCEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCEE
IYAYEITGGARLWVAQEVFRLNDGSDLEGKGVQPDIQPSSDWTRFRFEADPWIALALDRI
EEEEEECCCEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHH
REVR
HHCC
>Mature Secondary Structure
MLERMSFRWVSIWFLCALLWACTPASTEVREPAPTPTAISPTPTAALITPTPRPPLDATL
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHH
RQQIFTEVWTTINEHYLDPTFNGVDWARVRAEYGARALAAEDDASFFAVISAMVRLLRDD
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHH
HSRFVPPQAVIAEDQLTRGREEQVGIGVSTLPLSDGLLIQHVFPDSPAARAGLQPRDRIV
HHCCCCCHHHHCCHHHHCCCCHHHCCCEEECCCCCCEEEEEECCCCCHHHCCCCCCCCEE
AIDGLSFNLGSIEGPLGSSVRLLIVQPEGDSRELELIRERVEGRIEPLIRRLSDDVAYVG
EEECCEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
ISTLWVNDMHEQVATALQRLMAERPLRGVILDLRSNPGGWRDVLSGLLGHFVTGDVGAFI
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCHHHHH
SRKGATPLVVTARNPDLRGLPLVILVDRGTASYAELLAAVLQQEAQATVIGRPSAGNTET
HCCCCCCEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCCEE
IYAYEITGGARLWVAQEVFRLNDGSDLEGKGVQPDIQPSSDWTRFRFEADPWIALALDRI
EEEEEECCCEEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHH
REVR
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8034700; 8058761; 8590279; 8905231 [H]