| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
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The map label for this gene is pbpA [H]
Identifier: 222525211
GI number: 222525211
Start: 2476805
End: 2478526
Strand: Reverse
Name: pbpA [H]
Synonym: Chy400_1951
Alternate gene names: 222525211
Gene position: 2478526-2476805 (Counterclockwise)
Preceding gene: 222525212
Following gene: 222525210
Centisome position: 47.04
GC content: 56.1
Gene sequence:
>1722_bases ATGAGACGGCGCCGTTTCTGGTATGCGCCAGTACTGGTCATTGCGTTGGTCTTGCTCGGCTACGGTATCTGGTTGCCGGT TGAACAAGAGTCACGCTGGCTGTTGTTGCTCTGGATCGGCGGCCCACTGGCCGGCATCGTACTGTTGAGCTGGCTACACG ATACACCACCGGCAAGCGATCTGGCCCGTACAGTTTCACGGGTTGGGGTCGTGATTATTATCGGCTTTCTAATGCTCAGC CTGCAACTACTCCGTCAACAATTTGTGCAGGCTGGAGCTATCAGTAACCATGTTGTTACCAGTACTGATGGCAGTACAAT CAGTAATGTACGTCCGGTATTGATGACGCAGCGAGTGTTGCGTGGCGCGATTGTTGATCGACGCGGACGTGTGTTGGCCG AGAGCACAATGATCAACGGTATCGCCCGCCGGGTATATCCACTGGCAGGGCAATACGATATGACAGCGTTCGGTCATGTT CTCGGCTTTTTTAGCCCACGGTACGGCCAGAGTGCGCTGGAAGCCACCTACAATGAATACCTGTCGGGGGAACGCGGCAA CGAGTGGCAGGTGCTGCTCAATGAATGGACTGGCGAAGTACAGCGTGGCAATTCGTTGACGCTGACGCTTGACGCCGAAC TTCAGGCAAGAGTGGCTGCTTTACTCGGTGACCGCCGCGGCGCAGTGGTCGTGCTCGATCCGCGTACCGGTGCTATTCTG GCCATGGTCAGCCGACCTGGCTTTGATCCAGGTCAACTCGTGGTCGATCCAGCAGCACCTGATCTGGCAGCAGAACGCCA GCGGGTAAGTGATTACTGGGCTTCTCTCAACCGTGACGATGCTGGTCAACCGTTACTCAATCGGGCAACTCAGGGCCGAT ACCCACCCGGATCGACCTTCAAAACGGTAACGGCGGTGGCAGTGCTGGAATACTGGCTACAAGGGCGACCGGATCAGATT ACCTGCCCTAATGAGTTCTATCCGCAACCTGATGCGCCACCAATTGTCAATGCGGTGGACAATCTGGGCGCACAAATTGG TGAACCGGCAACTCTGGAACGGGTGTATGCATTTTCCTGTAATACGGCCTTCGCCCAATACGCCGTGCGCCTCGGTGCCG AACGATTAACCGAAGTTGCACAACGCTTTAATATCTTCGCACCAAACCGCCTGCCGAATGGTTTTCAGCCCCTGCGCGAT CTGCCTTCAAAGCCGTCTTTACTATCTGTACAGGACGATTTTTTGAACCAGCCCCGTGCGTTGGCCGACACCGGCTACGG TCAGGGCCAACTGCTGGTATCACCGTTGCAGATGGCACTTGTCGCAGCCACTATCGGTAACGATGGGGTCATGATGCAAC CTTACCTCGTTCAGCGGGTAACCCGCCCTGACGGGAGTACGATCTGGCAGGCCAATCCGTATAGCCTGCGTCGTGTTATG TCAAGCCAAACTGCTAATCGCATGCGCAGCTATATGGCTGCGGTAGCTCAATATGGCTTTGGACGAAGCATCTCGCAATA TGTTAACTGGCCGGTGGGAGGAAAATCGGGTACTGCGGAGCATATTCCCGGTGCGACACCTCACGCCTGGTTTATCGCGC TCGGCCCAATCGACACACCACGCTACGCAGTAGCGGTCATCATCGAGCAGGGTGGCGAAGGTAGCGGTGTAGCTGCCCGG CTGGCCGGCGAGGTATTGGCTGCTGCTTTCGCGTTAGAGTAA
Upstream 100 bases:
>100_bases CGTGCGAGTAACACTTCCCCTCGAACCCTAAATGTGCGGTATCATAACACTGTGTGCTCGCTGTAGGCGCAGTTGAGCAA TGGATGAGGAGTGTTATCGC
Downstream 100 bases:
>100_bases GTAAATTGCTGGTTTGAATACATGCTGGAACGTATGAGCTTTCGCTGGGTGTCGATATGGTTCCTGTGTGCGCTCTTGTG GGCATGCACACCTGCGTCAA
Product: peptidoglycan glycosyltransferase
Products: NA
Alternate protein names: PBPA [H]
Number of amino acids: Translated: 573; Mature: 573
Protein sequence:
>573_residues MRRRRFWYAPVLVIALVLLGYGIWLPVEQESRWLLLLWIGGPLAGIVLLSWLHDTPPASDLARTVSRVGVVIIIGFLMLS LQLLRQQFVQAGAISNHVVTSTDGSTISNVRPVLMTQRVLRGAIVDRRGRVLAESTMINGIARRVYPLAGQYDMTAFGHV LGFFSPRYGQSALEATYNEYLSGERGNEWQVLLNEWTGEVQRGNSLTLTLDAELQARVAALLGDRRGAVVVLDPRTGAIL AMVSRPGFDPGQLVVDPAAPDLAAERQRVSDYWASLNRDDAGQPLLNRATQGRYPPGSTFKTVTAVAVLEYWLQGRPDQI TCPNEFYPQPDAPPIVNAVDNLGAQIGEPATLERVYAFSCNTAFAQYAVRLGAERLTEVAQRFNIFAPNRLPNGFQPLRD LPSKPSLLSVQDDFLNQPRALADTGYGQGQLLVSPLQMALVAATIGNDGVMMQPYLVQRVTRPDGSTIWQANPYSLRRVM SSQTANRMRSYMAAVAQYGFGRSISQYVNWPVGGKSGTAEHIPGATPHAWFIALGPIDTPRYAVAVIIEQGGEGSGVAAR LAGEVLAAAFALE
Sequences:
>Translated_573_residues MRRRRFWYAPVLVIALVLLGYGIWLPVEQESRWLLLLWIGGPLAGIVLLSWLHDTPPASDLARTVSRVGVVIIIGFLMLS LQLLRQQFVQAGAISNHVVTSTDGSTISNVRPVLMTQRVLRGAIVDRRGRVLAESTMINGIARRVYPLAGQYDMTAFGHV LGFFSPRYGQSALEATYNEYLSGERGNEWQVLLNEWTGEVQRGNSLTLTLDAELQARVAALLGDRRGAVVVLDPRTGAIL AMVSRPGFDPGQLVVDPAAPDLAAERQRVSDYWASLNRDDAGQPLLNRATQGRYPPGSTFKTVTAVAVLEYWLQGRPDQI TCPNEFYPQPDAPPIVNAVDNLGAQIGEPATLERVYAFSCNTAFAQYAVRLGAERLTEVAQRFNIFAPNRLPNGFQPLRD LPSKPSLLSVQDDFLNQPRALADTGYGQGQLLVSPLQMALVAATIGNDGVMMQPYLVQRVTRPDGSTIWQANPYSLRRVM SSQTANRMRSYMAAVAQYGFGRSISQYVNWPVGGKSGTAEHIPGATPHAWFIALGPIDTPRYAVAVIIEQGGEGSGVAAR LAGEVLAAAFALE >Mature_573_residues MRRRRFWYAPVLVIALVLLGYGIWLPVEQESRWLLLLWIGGPLAGIVLLSWLHDTPPASDLARTVSRVGVVIIIGFLMLS LQLLRQQFVQAGAISNHVVTSTDGSTISNVRPVLMTQRVLRGAIVDRRGRVLAESTMINGIARRVYPLAGQYDMTAFGHV LGFFSPRYGQSALEATYNEYLSGERGNEWQVLLNEWTGEVQRGNSLTLTLDAELQARVAALLGDRRGAVVVLDPRTGAIL AMVSRPGFDPGQLVVDPAAPDLAAERQRVSDYWASLNRDDAGQPLLNRATQGRYPPGSTFKTVTAVAVLEYWLQGRPDQI TCPNEFYPQPDAPPIVNAVDNLGAQIGEPATLERVYAFSCNTAFAQYAVRLGAERLTEVAQRFNIFAPNRLPNGFQPLRD LPSKPSLLSVQDDFLNQPRALADTGYGQGQLLVSPLQMALVAATIGNDGVMMQPYLVQRVTRPDGSTIWQANPYSLRRVM SSQTANRMRSYMAAVAQYGFGRSISQYVNWPVGGKSGTAEHIPGATPHAWFIALGPIDTPRYAVAVIIEQGGEGSGVAAR LAGEVLAAAFALE
Specific function: Cell wall formation. Plays an important role in cell division and cell shape maintenance by cross-linking adjacent peptidoglycan chains through transpeptidation [H]
COG id: COG0768
COG function: function code M; Cell division protein FtsI/penicillin-binding protein 2
Gene ontology:
Cell location: Cell membrane; Single-pass type II membrane protein (Probable). Note=Localized to the division site (septum) along with newly synthesized peptidoglycan, between segregated nucleoids (Probable) [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI1786854, Length=479, Percent_Identity=29.2275574112735, Blast_Score=121, Evalue=1e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001460 [H]
Pfam domain/function: PF00905 Transpeptidase [H]
EC number: NA
Molecular weight: Translated: 62551; Mature: 62551
Theoretical pI: Translated: 8.82; Mature: 8.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRRRFWYAPVLVIALVLLGYGIWLPVEQESRWLLLLWIGGPLAGIVLLSWLHDTPPASD CCCCEEEHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCHHHHHHHHHHHCCCCCHHH LARTVSRVGVVIIIGFLMLSLQLLRQQFVQAGAISNHVVTSTDGSTISNVRPVLMTQRVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHCHHHHHHHHHH RGAIVDRRGRVLAESTMINGIARRVYPLAGQYDMTAFGHVLGFFSPRYGQSALEATYNEY HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH LSGERGNEWQVLLNEWTGEVQRGNSLTLTLDAELQARVAALLGDRRGAVVVLDPRTGAIL HCCCCCCCCEEEHHHHCCHHCCCCEEEEEECHHHHHHHHHHHCCCCCEEEEECCCCCEEE AMVSRPGFDPGQLVVDPAAPDLAAERQRVSDYWASLNRDDAGQPLLNRATQGRYPPGSTF EEEECCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCH KTVTAVAVLEYWLQGRPDQITCPNEFYPQPDAPPIVNAVDNLGAQIGEPATLERVYAFSC HHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHEEEEEC NTAFAQYAVRLGAERLTEVAQRFNIFAPNRLPNGFQPLRDLPSKPSLLSVQDDFLNQPRA CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCEEEECHHHCCCCCH LADTGYGQGQLLVSPLQMALVAATIGNDGVMMQPYLVQRVTRPDGSTIWQANPYSLRRVM HHCCCCCCCCEEHHHHHHHHHHHHCCCCCEEECHHHHHHHCCCCCCEEECCCHHHHHHHH SSQTANRMRSYMAAVAQYGFGRSISQYVNWPVGGKSGTAEHIPGATPHAWFIALGPIDTP HHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC RYAVAVIIEQGGEGSGVAARLAGEVLAAAFALE CEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure MRRRRFWYAPVLVIALVLLGYGIWLPVEQESRWLLLLWIGGPLAGIVLLSWLHDTPPASD CCCCEEEHHHHHHHHHHHHCCCCEEEECCCCCEEEEEEECCHHHHHHHHHHHCCCCCHHH LARTVSRVGVVIIIGFLMLSLQLLRQQFVQAGAISNHVVTSTDGSTISNVRPVLMTQRVL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHCHHHHHHHHHH RGAIVDRRGRVLAESTMINGIARRVYPLAGQYDMTAFGHVLGFFSPRYGQSALEATYNEY HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH LSGERGNEWQVLLNEWTGEVQRGNSLTLTLDAELQARVAALLGDRRGAVVVLDPRTGAIL HCCCCCCCCEEEHHHHCCHHCCCCEEEEEECHHHHHHHHHHHCCCCCEEEEECCCCCEEE AMVSRPGFDPGQLVVDPAAPDLAAERQRVSDYWASLNRDDAGQPLLNRATQGRYPPGSTF EEEECCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCH KTVTAVAVLEYWLQGRPDQITCPNEFYPQPDAPPIVNAVDNLGAQIGEPATLERVYAFSC HHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHEEEEEC NTAFAQYAVRLGAERLTEVAQRFNIFAPNRLPNGFQPLRDLPSKPSLLSVQDDFLNQPRA CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCEEEECHHHCCCCCH LADTGYGQGQLLVSPLQMALVAATIGNDGVMMQPYLVQRVTRPDGSTIWQANPYSLRRVM HHCCCCCCCCEEHHHHHHHHHHHHCCCCCEEECHHHHHHHCCCCCCEEECCCHHHHHHHH SSQTANRMRSYMAAVAQYGFGRSISQYVNWPVGGKSGTAEHIPGATPHAWFIALGPIDTP HHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC RYAVAVIIEQGGEGSGVAARLAGEVLAAAFALE CEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA