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The map label for this gene is recU [H]

Identifier: 222151344

GI number: 222151344

Start: 1206376

End: 1206981

Strand: Direct

Name: recU [H]

Synonym: MCCL_1097

Alternate gene names: 222151344

Gene position: 1206376-1206981 (Clockwise)

Preceding gene: 222151338

Following gene: 222151345

Centisome position: 57.38

GC content: 31.52

Gene sequence:

>606_bases
ATGGTCAATTACCCAAATGGCAAGAGAAATACGTCTAAAGCACTAGTTACATCAGTAAATAATCATAGTAAAATAGAATA
TGGAAAAAGAGGAATGCGTTTTGAAGAAGCAATCGACCATGCCAATCAATATTATTTGAAGCAGGATATCGCAGTTATTC
ATAAGAAACCAACGCCGATACAGATTGTAGATGTAGATTATCCAAAACGTTCCCGAGCCGTAATCAGAGAAGCATATTTC
AGAAAAGCTTCTACAACTGACTACAATGGTATTTATAGAGGTAAATATATTGACTTTGAAGCAAAAGCAACGCAAAATAA
AACTAGTTTTCCATTAAATAATATACATGAACATCAAGTAGAGCATATGCAACAGGTTTCAAAACATGGCGCCATATGTT
TTATATTATTTTATTTTTCATTTCATGAAGAAGTTTTCTTACTTCCAATCGACCCTTTTTTGAAGTATTGGGACCTGTAT
AAGAATGATAAGAAGAAATCTATTCCCATGAGTGACATAAAAAAATACGGTTATCCTGTGGAAAAAAAATATCAGCCTAG
AATTGACTATTTAAAAGTTATAGACCACATATATTTTAATGAATAA

Upstream 100 bases:

>100_bases
CTTTCAATACATTGTTGTAACATTTAATGGCTCCTCATCAGTTTTATGATACACTCATTGTATATTATATTTATTATCTT
CACAAATAGGATGAATCTAT

Downstream 100 bases:

>100_bases
ATCGAGAGTGAGGAAATTTTAATGGCTAGAAAGAAGAAACGTAATATAAAAAAGTTAATTCTACAAATTACAGGCGGCAT
ATTTCTTTTATTTGCTGCAC

Product: Holliday junction-specific endonuclease

Products: NA

Alternate protein names: Recombination protein U homolog [H]

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MVNYPNGKRNTSKALVTSVNNHSKIEYGKRGMRFEEAIDHANQYYLKQDIAVIHKKPTPIQIVDVDYPKRSRAVIREAYF
RKASTTDYNGIYRGKYIDFEAKATQNKTSFPLNNIHEHQVEHMQQVSKHGAICFILFYFSFHEEVFLLPIDPFLKYWDLY
KNDKKKSIPMSDIKKYGYPVEKKYQPRIDYLKVIDHIYFNE

Sequences:

>Translated_201_residues
MVNYPNGKRNTSKALVTSVNNHSKIEYGKRGMRFEEAIDHANQYYLKQDIAVIHKKPTPIQIVDVDYPKRSRAVIREAYF
RKASTTDYNGIYRGKYIDFEAKATQNKTSFPLNNIHEHQVEHMQQVSKHGAICFILFYFSFHEEVFLLPIDPFLKYWDLY
KNDKKKSIPMSDIKKYGYPVEKKYQPRIDYLKVIDHIYFNE
>Mature_201_residues
MVNYPNGKRNTSKALVTSVNNHSKIEYGKRGMRFEEAIDHANQYYLKQDIAVIHKKPTPIQIVDVDYPKRSRAVIREAYF
RKASTTDYNGIYRGKYIDFEAKATQNKTSFPLNNIHEHQVEHMQQVSKHGAICFILFYFSFHEEVFLLPIDPFLKYWDLY
KNDKKKSIPMSDIKKYGYPVEKKYQPRIDYLKVIDHIYFNE

Specific function: Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair

COG id: COG3331

COG function: function code R; Penicillin-binding protein-related factor A, putative recombinase

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recU family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004612
- InterPro:   IPR011335 [H]

Pfam domain/function: PF03838 RecU [H]

EC number: NA

Molecular weight: Translated: 23914; Mature: 23914

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVNYPNGKRNTSKALVTSVNNHSKIEYGKRGMRFEEAIDHANQYYLKQDIAVIHKKPTPI
CCCCCCCCCCCHHHHEEECCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCE
QIVDVDYPKRSRAVIREAYFRKASTTDYNGIYRGKYIDFEAKATQNKTSFPLNNIHEHQV
EEEECCCCCHHHHHHHHHHHHHCCCCCCCCEECCEEEEEECCCCCCCCCCCCCCHHHHHH
EHMQQVSKHGAICFILFYFSFHEEVFLLPIDPFLKYWDLYKNDKKKSIPMSDIKKYGYPV
HHHHHHHHCCCEEEHHHHHHHCCEEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHCCCC
EKKYQPRIDYLKVIDHIYFNE
CCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVNYPNGKRNTSKALVTSVNNHSKIEYGKRGMRFEEAIDHANQYYLKQDIAVIHKKPTPI
CCCCCCCCCCCHHHHEEECCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCE
QIVDVDYPKRSRAVIREAYFRKASTTDYNGIYRGKYIDFEAKATQNKTSFPLNNIHEHQV
EEEECCCCCHHHHHHHHHHHHHCCCCCCCCEECCEEEEEECCCCCCCCCCCCCCHHHHHH
EHMQQVSKHGAICFILFYFSFHEEVFLLPIDPFLKYWDLYKNDKKKSIPMSDIKKYGYPV
HHHHHHHHCCCEEEHHHHHHHCCEEEEEECHHHHHHHHHHCCCCCCCCCHHHHHHHCCCC
EKKYQPRIDYLKVIDHIYFNE
CCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA