| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is ydeG [H]
Identifier: 222110365
GI number: 222110365
Start: 1218944
End: 1220125
Strand: Direct
Name: ydeG [H]
Synonym: Dtpsy_1156
Alternate gene names: 222110365
Gene position: 1218944-1220125 (Clockwise)
Preceding gene: 222110364
Following gene: 222110367
Centisome position: 32.11
GC content: 67.6
Gene sequence:
>1182_bases ATGACCGACCAGAGCATCACGCGCCGAAACATCGGCGTTCTCACCGCCGCGCAGGCGCTCGGCGGCGCCAGCGCGCCCAT CGTGATGTCGCTGGGTGGGCTGGTCGGCCAGCAGCTTGCCAAGAATTCGGCCTGGATCACCTTGCCCGTGAGTCTGTTCG GCCTGGGTCTTGCCATCGGCACCTTGCCTGCCGCCTTCATCATGCGGCACCATGGCCGCCGCAACGGATACGTGGTGGGG GTCGGCTTCGGCGTGGCCTCGGGCCTGATCGCCGCGTTGGGCATCATGCTGGCCTCGTTCTGGATCTTCTGCGCCGGCAC CTTCCTGGCGGGCTTCTACGGCGCGTATGTGCAGAGCTACCGCTTCGCAGCCGCCGACACCGCCGAGGACGCGCTTAAGG CCAAGGCCATTTCCTGGGTCATGGTGGGCGGTCTCGCGGGCGCCATCATCGGGCCGCAGTTGGTGATCTTCACGCGCGAT GCGGTAGCGGGCACGCCCTACGTTGGCAGCTTCCTCAGCCAGGCGCTGCTGCCGCTGATCGCCTTGCCGATCCTGCTGAT GCTGCGCACGCCGAGCCAGACCCAGGCCGAAGCAGTCGCCGATAGCGGTCGGACGGTGCTGCAGCTCTTGGCGATGCCGC GCTATCTGCTGGCCGTGGCTGCGGGCGTGGTGTCCTATGGGGTGATGGCGTTCGTGATGACGGCCGCGCCGGTGGCGATG GTCAACCACGGGCATTCGGTGGACAACGCCGCCCTAGGAATACAGTGGCACCTGCTGGCGATGTTCGGGCCGAGCTTCTT CACCGGGCGACTGATGGTGCGCTACGGCAAGGAGCGCGTGACCGCCGTCGGCATGGTGCTGCTCGCCGCCTCCGGGGTGG TGGCCCTGGGCGGGCTCGGCCTGTCCCACTTCTGGGGCTCGCTGGCGCTGTTGGGCATCGGCTGGAATTTGAGTTTCATC GGCGCCACGGCGATGGTCACCGACTGCCACACCCCGGCCGAGCGGGGCAAGGCGCAGGGCATGAACGACTTCTTCGTCTT CGCCGCCACGGCGGCCGTGTCGTTCCTCGCGGGGTCGATCCTGCACAGCTCGGGCTGGCAAGCGGTCAACTGGATGATCT TCCCGGCCTTGGCGCTGATCTTGGTGCCGCTGCTGTGGCAGGGGCGGTACGGTTGCAACTGA
Upstream 100 bases:
>100_bases CCGGCTCGCGATGGTTCGTGAGCATCGCATGTCCATATAACTGAATATATATTCATGCGTGTAATATTTCCGGCCAGACA AACGAATAAGAAAGACGCCC
Downstream 100 bases:
>100_bases CTTGACTTGGGGCATTGATCGAGGACTGGAAGCCGATAAGTGGCCCGTTCCGGCACTACACGACTTGTCTCCACTGCTGA AACTTCGGAAAGCTACTTTG
Product: major facilitator superfamily protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 393; Mature: 392
Protein sequence:
>393_residues MTDQSITRRNIGVLTAAQALGGASAPIVMSLGGLVGQQLAKNSAWITLPVSLFGLGLAIGTLPAAFIMRHHGRRNGYVVG VGFGVASGLIAALGIMLASFWIFCAGTFLAGFYGAYVQSYRFAAADTAEDALKAKAISWVMVGGLAGAIIGPQLVIFTRD AVAGTPYVGSFLSQALLPLIALPILLMLRTPSQTQAEAVADSGRTVLQLLAMPRYLLAVAAGVVSYGVMAFVMTAAPVAM VNHGHSVDNAALGIQWHLLAMFGPSFFTGRLMVRYGKERVTAVGMVLLAASGVVALGGLGLSHFWGSLALLGIGWNLSFI GATAMVTDCHTPAERGKAQGMNDFFVFAATAAVSFLAGSILHSSGWQAVNWMIFPALALILVPLLWQGRYGCN
Sequences:
>Translated_393_residues MTDQSITRRNIGVLTAAQALGGASAPIVMSLGGLVGQQLAKNSAWITLPVSLFGLGLAIGTLPAAFIMRHHGRRNGYVVG VGFGVASGLIAALGIMLASFWIFCAGTFLAGFYGAYVQSYRFAAADTAEDALKAKAISWVMVGGLAGAIIGPQLVIFTRD AVAGTPYVGSFLSQALLPLIALPILLMLRTPSQTQAEAVADSGRTVLQLLAMPRYLLAVAAGVVSYGVMAFVMTAAPVAM VNHGHSVDNAALGIQWHLLAMFGPSFFTGRLMVRYGKERVTAVGMVLLAASGVVALGGLGLSHFWGSLALLGIGWNLSFI GATAMVTDCHTPAERGKAQGMNDFFVFAATAAVSFLAGSILHSSGWQAVNWMIFPALALILVPLLWQGRYGCN >Mature_392_residues TDQSITRRNIGVLTAAQALGGASAPIVMSLGGLVGQQLAKNSAWITLPVSLFGLGLAIGTLPAAFIMRHHGRRNGYVVGV GFGVASGLIAALGIMLASFWIFCAGTFLAGFYGAYVQSYRFAAADTAEDALKAKAISWVMVGGLAGAIIGPQLVIFTRDA VAGTPYVGSFLSQALLPLIALPILLMLRTPSQTQAEAVADSGRTVLQLLAMPRYLLAVAAGVVSYGVMAFVMTAAPVAMV NHGHSVDNAALGIQWHLLAMFGPSFFTGRLMVRYGKERVTAVGMVLLAASGVVALGGLGLSHFWGSLALLGIGWNLSFIG ATAMVTDCHTPAERGKAQGMNDFFVFAATAAVSFLAGSILHSSGWQAVNWMIFPALALILVPLLWQGRYGCN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 40950; Mature: 40819
Theoretical pI: Translated: 9.91; Mature: 9.91
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDQSITRRNIGVLTAAQALGGASAPIVMSLGGLVGQQLAKNSAWITLPVSLFGLGLAIG CCCCHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHH TLPAAFIMRHHGRRNGYVVGVGFGVASGLIAALGIMLASFWIFCAGTFLAGFYGAYVQSY HHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RFAAADTAEDALKAKAISWVMVGGLAGAIIGPQLVIFTRDAVAGTPYVGSFLSQALLPLI HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHH ALPILLMLRTPSQTQAEAVADSGRTVLQLLAMPRYLLAVAAGVVSYGVMAFVMTAAPVAM HHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VNHGHSVDNAALGIQWHLLAMFGPSFFTGRLMVRYGKERVTAVGMVLLAASGVVALGGLG HCCCCCCCCCEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCC LSHFWGSLALLGIGWNLSFIGATAMVTDCHTPAERGKAQGMNDFFVFAATAAVSFLAGSI HHHHHHHHHHHEECCCHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHH LHSSGWQAVNWMIFPALALILVPLLWQGRYGCN HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure TDQSITRRNIGVLTAAQALGGASAPIVMSLGGLVGQQLAKNSAWITLPVSLFGLGLAIG CCCHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHH TLPAAFIMRHHGRRNGYVVGVGFGVASGLIAALGIMLASFWIFCAGTFLAGFYGAYVQSY HHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RFAAADTAEDALKAKAISWVMVGGLAGAIIGPQLVIFTRDAVAGTPYVGSFLSQALLPLI HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHH ALPILLMLRTPSQTQAEAVADSGRTVLQLLAMPRYLLAVAAGVVSYGVMAFVMTAAPVAM HHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VNHGHSVDNAALGIQWHLLAMFGPSFFTGRLMVRYGKERVTAVGMVLLAASGVVALGGLG HCCCCCCCCCEECHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCC LSHFWGSLALLGIGWNLSFIGATAMVTDCHTPAERGKAQGMNDFFVFAATAAVSFLAGSI HHHHHHHHHHHEECCCHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHH LHSSGWQAVNWMIFPALALILVPLLWQGRYGCN HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]