| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is yjiJ [H]
Identifier: 222109430
GI number: 222109430
Start: 230597
End: 231865
Strand: Direct
Name: yjiJ [H]
Synonym: Dtpsy_0209
Alternate gene names: 222109430
Gene position: 230597-231865 (Clockwise)
Preceding gene: 222109427
Following gene: 222109436
Centisome position: 6.07
GC content: 75.33
Gene sequence:
>1269_bases ATGGAACCACAAGCCACCCCGTCGATTGATGTGCCCGCGCCCCGCGGGCCCGCCCTGCACTGGAGCGAGCGGCCCCATGC CGTGGCCCTGGCCGGCATGCTGGCGCTGGCGGTGGCCATGGGCGTGGGGCGGTTCGCGTTCACCCCGCTGCTGCCCATGA TGCTGCACGACGGGGTGCTGACCCTCACCGAGGGCAGCTGGCTGGCCACGGCCAACTACGTGGGCTACCTGCTGGGCGCG CTGGCCTGCATGGCACTGCCCTGGGTGGCACCGGGCTTCTATGCGCGCTGGCATCCGGCGCGGCTGGCGCGTGCCGGGCT GGTGGCCACGGTGCTGCTCACGCTGGCGATGGCGCTGCCCGTGGCCGCCGCGTGGCCGGCGCTGCGCTTTGCGGCCGGGG CCGCCAGCGCCTTCGTGCTGCTGAACGTGGCGGCCTGGTGCATGGTGCGCTTGGCGGTGCTGGGCCGCCCGGCCATGGGC GGGCTGATCTTCTGCGGGCCGGGCGTGGGCATCGTGCTCACGGGGCTGGCCGCCAGCGCGATGGTGGCAGCGCAGTGGCG TGCGGCCTCGGGCTGGGTGGTCTTCGGGATGCTCTCGGTGCTGCTGTGCGTGGGCGTGTGGCCCGTGGTGCGTGGCCGCG CGGTCAAGGCCGACCCCGGTGCCCAGCCCCGCGCGGCCGCGCAGGGGGGAAACGCCGGCACCCTGGCGGCGCGCGGCGTG CACGCCGTGGCGTACGGCCTGGCGGGGCTGGGCTACATCGTGACCGCCACCTTCCTGCCCGTGATTGCGCGTGCCGCGCT GCCCTCCGGTTCACCCTGGCCCGACCTTTTCTGGCCGATGTTCGGCGCGGGCGTGGCCGTAGGCGCGGCGCTCAGCACGC GCGCGCCCAGCGCCTGGGACCGGCGCTGGCTGCTGCTGGCGGCGTATGCGCTGCAGGCGCTTGGCATCGTGCTGGGGCTG GTCTGGCCCACGCCGGCGGGCTTTGCACTCAGCAGCGCGCTGGTGGGCCTGCCGTTCACGGCCATCACCTTCTACGGCCT GCAGGAGGCGCGGCGCCTGTGGCCGCAGTCTGCCGACAGCTTTGCGAGCCTGGTCACGGCCGTCTACGGCCTGGGCCAGA TCGCGGGTCCGCCGCTGGTGGCGTGGCTGCTCGCGCACGCCGATGCCGGCCAGGGCTTTGCCCGCGGGCTGGCGCTGGCG GCGGGGGCACTGGTGGCCGGCGCGGCGATGTACGGCTGGTCGGCCTGGCGCTGGCCGCAGCGCGCCTGA
Upstream 100 bases:
>100_bases CTCCAGTGCGACCAGGTCCATGGATTCGTTTGTGAGATGATTTATAAAAAAATCATCTTAAAAAAAGATTGATGGCGATC ATACCGCCGGAGACCGCGCC
Downstream 100 bases:
>100_bases CAGGCCGTCAGTGCTGCCCCTGCAGGCGCGCGTCCCAGGCCTCGCTCTGTCCGCTGTCCAGGCGCCGCTGGAACAGCCGC TGCCATGACGGCGGCAGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 422; Mature: 422
Protein sequence:
>422_residues MEPQATPSIDVPAPRGPALHWSERPHAVALAGMLALAVAMGVGRFAFTPLLPMMLHDGVLTLTEGSWLATANYVGYLLGA LACMALPWVAPGFYARWHPARLARAGLVATVLLTLAMALPVAAAWPALRFAAGAASAFVLLNVAAWCMVRLAVLGRPAMG GLIFCGPGVGIVLTGLAASAMVAAQWRAASGWVVFGMLSVLLCVGVWPVVRGRAVKADPGAQPRAAAQGGNAGTLAARGV HAVAYGLAGLGYIVTATFLPVIARAALPSGSPWPDLFWPMFGAGVAVGAALSTRAPSAWDRRWLLLAAYALQALGIVLGL VWPTPAGFALSSALVGLPFTAITFYGLQEARRLWPQSADSFASLVTAVYGLGQIAGPPLVAWLLAHADAGQGFARGLALA AGALVAGAAMYGWSAWRWPQRA
Sequences:
>Translated_422_residues MEPQATPSIDVPAPRGPALHWSERPHAVALAGMLALAVAMGVGRFAFTPLLPMMLHDGVLTLTEGSWLATANYVGYLLGA LACMALPWVAPGFYARWHPARLARAGLVATVLLTLAMALPVAAAWPALRFAAGAASAFVLLNVAAWCMVRLAVLGRPAMG GLIFCGPGVGIVLTGLAASAMVAAQWRAASGWVVFGMLSVLLCVGVWPVVRGRAVKADPGAQPRAAAQGGNAGTLAARGV HAVAYGLAGLGYIVTATFLPVIARAALPSGSPWPDLFWPMFGAGVAVGAALSTRAPSAWDRRWLLLAAYALQALGIVLGL VWPTPAGFALSSALVGLPFTAITFYGLQEARRLWPQSADSFASLVTAVYGLGQIAGPPLVAWLLAHADAGQGFARGLALA AGALVAGAAMYGWSAWRWPQRA >Mature_422_residues MEPQATPSIDVPAPRGPALHWSERPHAVALAGMLALAVAMGVGRFAFTPLLPMMLHDGVLTLTEGSWLATANYVGYLLGA LACMALPWVAPGFYARWHPARLARAGLVATVLLTLAMALPVAAAWPALRFAAGAASAFVLLNVAAWCMVRLAVLGRPAMG GLIFCGPGVGIVLTGLAASAMVAAQWRAASGWVVFGMLSVLLCVGVWPVVRGRAVKADPGAQPRAAAQGGNAGTLAARGV HAVAYGLAGLGYIVTATFLPVIARAALPSGSPWPDLFWPMFGAGVAVGAALSTRAPSAWDRRWLLLAAYALQALGIVLGL VWPTPAGFALSSALVGLPFTAITFYGLQEARRLWPQSADSFASLVTAVYGLGQIAGPPLVAWLLAHADAGQGFARGLALA AGALVAGAAMYGWSAWRWPQRA
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790788, Length=367, Percent_Identity=31.6076294277929, Blast_Score=112, Evalue=5e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010645 - InterPro: IPR016196 [H]
Pfam domain/function: PF06779 DUF1228 [H]
EC number: NA
Molecular weight: Translated: 43462; Mature: 43462
Theoretical pI: Translated: 10.71; Mature: 10.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEPQATPSIDVPAPRGPALHWSERPHAVALAGMLALAVAMGVGRFAFTPLLPMMLHDGVL CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEE TLTEGSWLATANYVGYLLGALACMALPWVAPGFYARWHPARLARAGLVATVLLTLAMALP EEECCCEEEHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHH VAAAWPALRFAAGAASAFVLLNVAAWCMVRLAVLGRPAMGGLIFCGPGVGIVLTGLAASA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHH MVAAQWRAASGWVVFGMLSVLLCVGVWPVVRGRAVKADPGAQPRAAAQGGNAGTLAARGV HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHCCCCCCCHHHHHH HAVAYGLAGLGYIVTATFLPVIARAALPSGSPWPDLFWPMFGAGVAVGAALSTRAPSAWD HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH RRWLLLAAYALQALGIVLGLVWPTPAGFALSSALVGLPFTAITFYGLQEARRLWPQSADS HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHH FASLVTAVYGLGQIAGPPLVAWLLAHADAGQGFARGLALAAGALVAGAAMYGWSAWRWPQ HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHCCCCC RA CC >Mature Secondary Structure MEPQATPSIDVPAPRGPALHWSERPHAVALAGMLALAVAMGVGRFAFTPLLPMMLHDGVL CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCEE TLTEGSWLATANYVGYLLGALACMALPWVAPGFYARWHPARLARAGLVATVLLTLAMALP EEECCCEEEHHHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHH VAAAWPALRFAAGAASAFVLLNVAAWCMVRLAVLGRPAMGGLIFCGPGVGIVLTGLAASA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHH MVAAQWRAASGWVVFGMLSVLLCVGVWPVVRGRAVKADPGAQPRAAAQGGNAGTLAARGV HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCHHHCCCCCCCHHHHHH HAVAYGLAGLGYIVTATFLPVIARAALPSGSPWPDLFWPMFGAGVAVGAALSTRAPSAWD HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH RRWLLLAAYALQALGIVLGLVWPTPAGFALSSALVGLPFTAITFYGLQEARRLWPQSADS HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHH FASLVTAVYGLGQIAGPPLVAWLLAHADAGQGFARGLALAAGALVAGAAMYGWSAWRWPQ HHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCHHCCCCC RA CC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7610040; 9278503 [H]