Click here to switch to the map view.

The map label for this gene is ybgJ [H]

Identifier: 222102907

GI number: 222102907

Start: 592357

End: 593067

Strand: Direct

Name: ybgJ [H]

Synonym: Avi_7657

Alternate gene names: 222102907

Gene position: 592357-593067 (Clockwise)

Preceding gene: 222102906

Following gene: 222102908

Centisome position: 93.76

GC content: 57.67

Gene sequence:

>711_bases
ATGGCGACAATGGATATGAAAACCCTGACACATCCCGCAGTGATTGCTTCCTCCACAGCGGATATGCCGAAAATCTCTGC
CATTGGCACCAAAGCCTTTGTGGTGGATGCGCCCGGCCCGTTTGATTTGGCCTCGCAGCGGCGTATCTGGGCCTTATCCG
CCATAGTTCAGGATTGGCCGGATGTGCAGGAAATTGTGCCGGGCATGACCAATCTGCTGTTGGTGCTGCATCACACGCCT
GAAGACCACGCGGCCATCGCAAGCCGCCTGCTGGAAGCATGGAATGCGGCGCAAGGCATGGATTTGACCGGGAAAACCGT
TGAAATCCCGGTGACCTATGGTGGAGACCATGCCACTGATCTTCCTGCGCTTTGCGATCTTTCCGGCCTATCAGATCGCG
ATATTGTCAAAATTCATGCGGCTGGTACCTACACCGTGTTTGCACTGGGTTCTGCACCGGGCTTTGGCTACCTGCATGGA
CTTGACCCGCGCATTCACATGCCGCGAAAAACCGTGCCATCGCTGAAAATGGCGCGTGGCTGCCTGACCATTGGCGGCAT
GCAGACCGGGGTTGCAGTCTTGACCGGGCCGAATGGCTGGAACTCCATCGGCTTTGCCGACGTGCCGATGTTTGATCCCA
TGGCGGCCTCGCCTGCCCTGCTGGCTCCCGGCGATACGGTGCGCTTTATTGCCGAGAGGATCGAGCTATGA

Upstream 100 bases:

>100_bases
ATGTTATCGCACCGCAAGACGGCATTCTTGGCGAAGCCTTGGTCAAAAGCGGCACCCTCGTTGGCTATGGCGACCCTTTG
TTTTTGGTCGAACAACCCTG

Downstream 100 bases:

>100_bases
TCGAGGTTCTCACCACTGGCCCCCTCAACACCGTGCAGGATCTTGGCCGTTTTGGATTTCGCAACATCGGCGTCACCACC
TGTGGCGCGATGGACCCTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MATMDMKTLTHPAVIASSTADMPKISAIGTKAFVVDAPGPFDLASQRRIWALSAIVQDWPDVQEIVPGMTNLLLVLHHTP
EDHAAIASRLLEAWNAAQGMDLTGKTVEIPVTYGGDHATDLPALCDLSGLSDRDIVKIHAAGTYTVFALGSAPGFGYLHG
LDPRIHMPRKTVPSLKMARGCLTIGGMQTGVAVLTGPNGWNSIGFADVPMFDPMAASPALLAPGDTVRFIAERIEL

Sequences:

>Translated_236_residues
MATMDMKTLTHPAVIASSTADMPKISAIGTKAFVVDAPGPFDLASQRRIWALSAIVQDWPDVQEIVPGMTNLLLVLHHTP
EDHAAIASRLLEAWNAAQGMDLTGKTVEIPVTYGGDHATDLPALCDLSGLSDRDIVKIHAAGTYTVFALGSAPGFGYLHG
LDPRIHMPRKTVPSLKMARGCLTIGGMQTGVAVLTGPNGWNSIGFADVPMFDPMAASPALLAPGDTVRFIAERIEL
>Mature_235_residues
ATMDMKTLTHPAVIASSTADMPKISAIGTKAFVVDAPGPFDLASQRRIWALSAIVQDWPDVQEIVPGMTNLLLVLHHTPE
DHAAIASRLLEAWNAAQGMDLTGKTVEIPVTYGGDHATDLPALCDLSGLSDRDIVKIHAAGTYTVFALGSAPGFGYLHGL
DPRIHMPRKTVPSLKMARGCLTIGGMQTGVAVLTGPNGWNSIGFADVPMFDPMAASPALLAPGDTVRFIAERIEL

Specific function: Unknown

COG id: COG2049

COG function: function code E; Allophanate hydrolase subunit 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786929, Length=211, Percent_Identity=39.8104265402844, Blast_Score=160, Evalue=8e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003833
- InterPro:   IPR020899
- InterPro:   IPR010016
- InterPro:   IPR002130 [H]

Pfam domain/function: PF02682 AHS1 [H]

EC number: NA

Molecular weight: Translated: 24990; Mature: 24859

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATMDMKTLTHPAVIASSTADMPKISAIGTKAFVVDAPGPFDLASQRRIWALSAIVQDWP
CCCCCCHHCCCCCEEECCCCCCCCEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCC
DVQEIVPGMTNLLLVLHHTPEDHAAIASRLLEAWNAAQGMDLTGKTVEIPVTYGGDHATD
CHHHHHCCHHHEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCC
LPALCDLSGLSDRDIVKIHAAGTYTVFALGSAPGFGYLHGLDPRIHMPRKTVPSLKMARG
CCHHHCCCCCCCCCEEEEEECCEEEEEEEECCCCCCEEECCCCCEECCCCCCCHHHHHHH
CLTIGGMQTGVAVLTGPNGWNSIGFADVPMFDPMAASPALLAPGDTVRFIAERIEL
HEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHCC
>Mature Secondary Structure 
ATMDMKTLTHPAVIASSTADMPKISAIGTKAFVVDAPGPFDLASQRRIWALSAIVQDWP
CCCCCHHCCCCCEEECCCCCCCCEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCC
DVQEIVPGMTNLLLVLHHTPEDHAAIASRLLEAWNAAQGMDLTGKTVEIPVTYGGDHATD
CHHHHHCCHHHEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCC
LPALCDLSGLSDRDIVKIHAAGTYTVFALGSAPGFGYLHGLDPRIHMPRKTVPSLKMARG
CCHHHCCCCCCCCCEEEEEECCEEEEEEEECCCCCCEEECCCCCEECCCCCCCHHHHHHH
CLTIGGMQTGVAVLTGPNGWNSIGFADVPMFDPMAASPALLAPGDTVRFIAERIEL
HEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]