| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
Click here to switch to the map view.
The map label for this gene is 222102897
Identifier: 222102897
GI number: 222102897
Start: 579230
End: 580588
Strand: Direct
Name: 222102897
Synonym: Avi_7645
Alternate gene names: NA
Gene position: 579230-580588 (Clockwise)
Preceding gene: 222102895
Following gene: 222102898
Centisome position: 91.68
GC content: 54.45
Gene sequence:
>1359_bases ATGAAAACTGTTCTTTTCTGTTTAGCCCTTTTTCTTTTGCCTATTTCATCTGCTTTTGCCGACTGTCCCGCCCCAATTGA CAACAGCTTTGCAGCGGCGGCCAATGCCAAGTTCGACTGCTCCAGTAGCCTGCCCCTGAAAGGTCACGAAACAGACCGCA AGTTCCAGGTTCATTATGATTTTCCAAAGACCTTGCCCGATACCAGCAAGCTGCCATGGCTGACGATCGATCCCTTCAAG AATCCCGCTGACTATATGCAGGCCGTCTTGAATTACGTCACCAAGGTGAACGCTCGCCCTGAGATTGATTGGCGCATCCA GGATAATAAGGTCGAGGAATGGTGCGATGCGCCATGGTTCTTCATGCTGAGGGAGCCACTGCACGGTATGACCACCGAAC GGTGGTCTCGTCCGAAGGAGCTTCACGCGCTCCAAACAGATTGGGAGCGTACTTTCGCTGTCGGGATCTACAACGATGTG GCCTGCTACGGTTTTGGTCAGATCTGGGCCGATCCGGCCTTTCCCAAAACCCTTGACTTTGCATTCGCGGACGGTGCCGT GGCGGCCAAAATGCTGTTCACGTCAGCAAAGCCTTCCAGCGTTCCTTATCTTGCAGGGTCAAAGGAGTGGGACGTTGCCG GAGAAAAGGACGGCAGCACCATGACGATGCGGCTTCTGCAATTTGATCTGTCGATTAAGGACAAACGTTCGCCCAACGGC TGGTTCTTCGGGACATTCGTCTATAATGCCATGCAGCCCGGTGATACGCCGTATCAGCGCCTGGTTCCGGTCGGCCTGAT CTGGGGAAGCGACCCTGCGTTGAATGCAAAAGCATATCTGGAACAAGCCATGTCGCCGACCGAAAGCTGGGTCAATCCTG CCGTCGCCACGATGTTTTATCCCCTCCCGAGACAGCATCTCGGCCTTTTCGGGCGCGCCAATGGCCCCGTCGACAACCCA ATGTCCGCCTGCATTACATGTCATCAACGCGCGCTTGACTGGGGGACAGCAGTCTTGCCTGACAGCCCTGAAGCGGCGCA AGCGGCGGAACTGTTACCAGATGTTCCCACTGATCCATACAACGACTCAGCCGTCGCCGCCTATTTCAGAAACATTGGGT CCAATTCACCCGTGCCGGACACGCAGTCGCTTGATTATGTTTTGCAGGTTTCAAAAGGAATTTCTGCCTTCCGCAATTGG GTGAAGACCGATTTTCCTGATCATGCCGCATCCACCTCGGATGTCCCGCCCTACCCCTTCAAACCCGGCAACACAATCAC CGTGACGCCTGTTGACATTACTGCTCCTGGCGCTGAAAAACTTGAACTCGATCCAACCGGCAAGCTTTTCCTTCGCTGA
Upstream 100 bases:
>100_bases AAGTTACAAAATACACGTAAAACACGTGTCAGGTTGCATATTTGCAATCCAAGACTCTTGGCTTTACATCGGTCTGACAT CACCGAGCTGGGGAGCCACA
Downstream 100 bases:
>100_bases TATGATATGATACTTTAAATATATTCCGTCTCCAGGGGGCTGCACATGTTGTCATTAAACATCTTTGGCCGCTTTCTGAT TGTCGACTCTCATGGGTGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 452; Mature: 452
Protein sequence:
>452_residues MKTVLFCLALFLLPISSAFADCPAPIDNSFAAAANAKFDCSSSLPLKGHETDRKFQVHYDFPKTLPDTSKLPWLTIDPFK NPADYMQAVLNYVTKVNARPEIDWRIQDNKVEEWCDAPWFFMLREPLHGMTTERWSRPKELHALQTDWERTFAVGIYNDV ACYGFGQIWADPAFPKTLDFAFADGAVAAKMLFTSAKPSSVPYLAGSKEWDVAGEKDGSTMTMRLLQFDLSIKDKRSPNG WFFGTFVYNAMQPGDTPYQRLVPVGLIWGSDPALNAKAYLEQAMSPTESWVNPAVATMFYPLPRQHLGLFGRANGPVDNP MSACITCHQRALDWGTAVLPDSPEAAQAAELLPDVPTDPYNDSAVAAYFRNIGSNSPVPDTQSLDYVLQVSKGISAFRNW VKTDFPDHAASTSDVPPYPFKPGNTITVTPVDITAPGAEKLELDPTGKLFLR
Sequences:
>Translated_452_residues MKTVLFCLALFLLPISSAFADCPAPIDNSFAAAANAKFDCSSSLPLKGHETDRKFQVHYDFPKTLPDTSKLPWLTIDPFK NPADYMQAVLNYVTKVNARPEIDWRIQDNKVEEWCDAPWFFMLREPLHGMTTERWSRPKELHALQTDWERTFAVGIYNDV ACYGFGQIWADPAFPKTLDFAFADGAVAAKMLFTSAKPSSVPYLAGSKEWDVAGEKDGSTMTMRLLQFDLSIKDKRSPNG WFFGTFVYNAMQPGDTPYQRLVPVGLIWGSDPALNAKAYLEQAMSPTESWVNPAVATMFYPLPRQHLGLFGRANGPVDNP MSACITCHQRALDWGTAVLPDSPEAAQAAELLPDVPTDPYNDSAVAAYFRNIGSNSPVPDTQSLDYVLQVSKGISAFRNW VKTDFPDHAASTSDVPPYPFKPGNTITVTPVDITAPGAEKLELDPTGKLFLR >Mature_452_residues MKTVLFCLALFLLPISSAFADCPAPIDNSFAAAANAKFDCSSSLPLKGHETDRKFQVHYDFPKTLPDTSKLPWLTIDPFK NPADYMQAVLNYVTKVNARPEIDWRIQDNKVEEWCDAPWFFMLREPLHGMTTERWSRPKELHALQTDWERTFAVGIYNDV ACYGFGQIWADPAFPKTLDFAFADGAVAAKMLFTSAKPSSVPYLAGSKEWDVAGEKDGSTMTMRLLQFDLSIKDKRSPNG WFFGTFVYNAMQPGDTPYQRLVPVGLIWGSDPALNAKAYLEQAMSPTESWVNPAVATMFYPLPRQHLGLFGRANGPVDNP MSACITCHQRALDWGTAVLPDSPEAAQAAELLPDVPTDPYNDSAVAAYFRNIGSNSPVPDTQSLDYVLQVSKGISAFRNW VKTDFPDHAASTSDVPPYPFKPGNTITVTPVDITAPGAEKLELDPTGKLFLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50113; Mature: 50113
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTVLFCLALFLLPISSAFADCPAPIDNSFAAAANAKFDCSSSLPLKGHETDRKFQVHYD CHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEC FPKTLPDTSKLPWLTIDPFKNPADYMQAVLNYVTKVNARPEIDWRIQDNKVEEWCDAPWF CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCCCHH FMLREPLHGMTTERWSRPKELHALQTDWERTFAVGIYNDVACYGFGQIWADPAFPKTLDF HHHHHHHCCCCHHHHCCCHHHHHHHCCCHHEEEEEECCCHHHEECHHHHCCCCCCCCEEH AFADGAVAAKMLFTSAKPSSVPYLAGSKEWDVAGEKDGSTMTMRLLQFDLSIKDKRSPNG HHCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCHHEEEEHHHCCCCCCCCCCCC WFFGTFVYNAMQPGDTPYQRLVPVGLIWGSDPALNAKAYLEQAMSPTESWVNPAVATMFY EEEEEEHHHCCCCCCCCHHHHEEEEEEECCCCCCCHHHHHHHHCCHHHHHHCHHHHHHHC PLPRQHLGLFGRANGPVDNPMSACITCHQRALDWGTAVLPDSPEAAQAAELLPDVPTDPY CCCHHHHCEEECCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHCCCCCCCCC NDSAVAAYFRNIGSNSPVPDTQSLDYVLQVSKGISAFRNWVKTDFPDHAASTSDVPPYPF CCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC KPGNTITVTPVDITAPGAEKLELDPTGKLFLR CCCCEEEEEEEEEECCCCCEEEECCCCCEEEC >Mature Secondary Structure MKTVLFCLALFLLPISSAFADCPAPIDNSFAAAANAKFDCSSSLPLKGHETDRKFQVHYD CHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEC FPKTLPDTSKLPWLTIDPFKNPADYMQAVLNYVTKVNARPEIDWRIQDNKVEEWCDAPWF CCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCCCHH FMLREPLHGMTTERWSRPKELHALQTDWERTFAVGIYNDVACYGFGQIWADPAFPKTLDF HHHHHHHCCCCHHHHCCCHHHHHHHCCCHHEEEEEECCCHHHEECHHHHCCCCCCCCEEH AFADGAVAAKMLFTSAKPSSVPYLAGSKEWDVAGEKDGSTMTMRLLQFDLSIKDKRSPNG HHCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCHHEEEEHHHCCCCCCCCCCCC WFFGTFVYNAMQPGDTPYQRLVPVGLIWGSDPALNAKAYLEQAMSPTESWVNPAVATMFY EEEEEEHHHCCCCCCCCHHHHEEEEEEECCCCCCCHHHHHHHHCCHHHHHHCHHHHHHHC PLPRQHLGLFGRANGPVDNPMSACITCHQRALDWGTAVLPDSPEAAQAAELLPDVPTDPY CCCHHHHCEEECCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHCCCCCCCCC NDSAVAAYFRNIGSNSPVPDTQSLDYVLQVSKGISAFRNWVKTDFPDHAASTSDVPPYPF CCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC KPGNTITVTPVDITAPGAEKLELDPTGKLFLR CCCCEEEEEEEEEECCCCCEEEECCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA