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The map label for this gene is yciR [C]

Identifier: 222102895

GI number: 222102895

Start: 574970

End: 576937

Strand: Direct

Name: yciR [C]

Synonym: Avi_7641

Alternate gene names: 222102895

Gene position: 574970-576937 (Clockwise)

Preceding gene: 222102893

Following gene: 222102897

Centisome position: 91.01

GC content: 47.76

Gene sequence:

>1968_bases
ATGCCGGTTTTCAAATTCTCTAAACTCGTTCGTGAATTGCTGACTGTCCGATCTGATAATCCCGATTTGCTAAAAGCCCA
ATATCGCGCTTTCTCCAGCCAAATGCCGATGATGTATTTCATCTTGCTGTCCAGCAGCTGGGCGTTGGCCATCACGCATT
TTCAGTCCTCGCCCTTGTATCTTACCGTCGGCATGCCGCTTCTGTTTACGTGTCTAGGCGGCCTACGAATGGTATTCTGG
TTGCGAAACCGCAGTGTTGAGCCGACAGCTGAAATGGCCCACGCCGCAATGACCTGCGCAAATCGTCTTGCCATTGTCAT
TGCAATCACATTTGCGGTTTGGTGTTACATGTTGTTACCTTATGGAGATGAATACGAGCGATCTTACGTCTCTTTCTACA
TGGCAATTACCGTAATGTCTTGCATATTCTGCTTGATGTATCTGCGATCTGCGGCAGTAATTGTTACTATAATCGTCAGC
GTGTCATTTATAATATTTTTCATTTCACTTGAAAAAATTATTTGTATAGCCGTTGCGGTCAATATCATATTGGTTTGCGC
AGGAATTATATCGGTTTTGCTCACGAATTACCGCAATTTCGAGCAGATGGTCCTATCACAACATAGGGCAGAAGCGTTGA
GCAACGAAAATTTACGACTGGCCCACGTCGATAGCCTAACCGAGCTACCAAACCGACGAGCGTTTTTTTCGTATCTTGAA
TTCGAACTGACGAAAGCGAGTACCGTTGGTTCCAGGGTCGCCCTTGGCCTTATCGACCTCGACGGGTTCAAACCGATTAA
CGACCTTTACGGCCATTCGACAGGTGATCGGCTTTTGGTTGAAGTGGGAAAACGTCTGTTGGATCTTCCTGAGGGCCACA
AAATCTTCCGGCTGGGCGGTGATGAATTTGCGGTGATTGCGACGAATTCTCTAGACGATGAACAGTTCTTAAGCGCCGCG
AATGCACTGATTGAGCGGCTTCATCACCCTTTCCATATGGCGGAGGCCACCGTTCAGATTTCTGCATCAATGGGCATTGC
AATCTATCCGGATCTCACATTGACGCCAGATAGATTGCTTGATCAGGCTGACTACGCCCTCTATCACGCAAAGAATACTC
GACGTGGGAGTGCGGTATTGTTTAACGCGTGCCATGAAAGACAAATCAATATTAACGCCAGCATCGAACAAACACTCAAG
CAAGCTGACATATCGCATGAAATGTCCGTCGTCTATCAGCCCATCATTGATATCAGACAGGGAAAGCCCGTTGGCTTCGA
GGCGCTGGCCCGTTGGGAAAGCCCAACATTAGGCTGTGTATCGCCCGCCGAGTTTTTTCCTATTGCGGAGCGAGCCGGGA
TCGTCGGTCTTTTAACGAGACCACTTCTTAGAAAGGCACTTGATGCCGCAAGCCAATGGGATAGGGACCTCCGGCTATCG
TTCAATCTTTCTGCTTACGATCTTAACTTGAGCGAAAGTGCAACGCTCTTGATTGATATCATCGAGAATGGGAAATTTGA
CGCAGGTCGTATTGATTTTGAAATTACCGAAACAGCATTCACACATGACTTCACACAGGTTAAGCGGTCCATTGAAATGC
TGCGGTCACGTGGCTGCGGAATTTCTCTTGACGATTTTGGCATTGGTTACTCGAGCCTCACACGACTGCACTCTCTTCCA
CTCACCAAGATCAAGATTGATCGCAGCTTTGTCGTAGGTCTGGACAAGACACCTGCAAGTTATAAAATTGTTAAGTCCGT
ACTCGCTCTCAGCCAAGATATGGGATTGGAGTGTGTTGTTGAAGGTATAGAAACACACGACGAATTGGCGGCTCTACAGA
AACTCGGCGGAATCCTCGTTCAAGGTTATATCTGTTCTCCGCCACTCCGAGAGTCAGACGTGGCGGAGTTCATTGCGCGA
ACGGCAGATACCAGTGCTTTTCAGGCGTCCGGCGTGTTCAATTTTTGA

Upstream 100 bases:

>100_bases
CAGCGCCGCAGAAGATTCTTTTTTTGATTGAACTTCGTTATGATTATATAAGTAATATGTAATTATAACGGCTGGCTGAA
CCATAATCCTGGATTAAACG

Downstream 100 bases:

>100_bases
TCCACGAGCGTTGATACTTGGACCATTCTGACGCCGCTGACTGAGCGTTAATACAGGTCATAAATAGTCTGTCGGTCAGG
CCGCCGAGCGATTGCTTTCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 655; Mature: 654

Protein sequence:

>655_residues
MPVFKFSKLVRELLTVRSDNPDLLKAQYRAFSSQMPMMYFILLSSSWALAITHFQSSPLYLTVGMPLLFTCLGGLRMVFW
LRNRSVEPTAEMAHAAMTCANRLAIVIAITFAVWCYMLLPYGDEYERSYVSFYMAITVMSCIFCLMYLRSAAVIVTIIVS
VSFIIFFISLEKIICIAVAVNIILVCAGIISVLLTNYRNFEQMVLSQHRAEALSNENLRLAHVDSLTELPNRRAFFSYLE
FELTKASTVGSRVALGLIDLDGFKPINDLYGHSTGDRLLVEVGKRLLDLPEGHKIFRLGGDEFAVIATNSLDDEQFLSAA
NALIERLHHPFHMAEATVQISASMGIAIYPDLTLTPDRLLDQADYALYHAKNTRRGSAVLFNACHERQININASIEQTLK
QADISHEMSVVYQPIIDIRQGKPVGFEALARWESPTLGCVSPAEFFPIAERAGIVGLLTRPLLRKALDAASQWDRDLRLS
FNLSAYDLNLSESATLLIDIIENGKFDAGRIDFEITETAFTHDFTQVKRSIEMLRSRGCGISLDDFGIGYSSLTRLHSLP
LTKIKIDRSFVVGLDKTPASYKIVKSVLALSQDMGLECVVEGIETHDELAALQKLGGILVQGYICSPPLRESDVAEFIAR
TADTSAFQASGVFNF

Sequences:

>Translated_655_residues
MPVFKFSKLVRELLTVRSDNPDLLKAQYRAFSSQMPMMYFILLSSSWALAITHFQSSPLYLTVGMPLLFTCLGGLRMVFW
LRNRSVEPTAEMAHAAMTCANRLAIVIAITFAVWCYMLLPYGDEYERSYVSFYMAITVMSCIFCLMYLRSAAVIVTIIVS
VSFIIFFISLEKIICIAVAVNIILVCAGIISVLLTNYRNFEQMVLSQHRAEALSNENLRLAHVDSLTELPNRRAFFSYLE
FELTKASTVGSRVALGLIDLDGFKPINDLYGHSTGDRLLVEVGKRLLDLPEGHKIFRLGGDEFAVIATNSLDDEQFLSAA
NALIERLHHPFHMAEATVQISASMGIAIYPDLTLTPDRLLDQADYALYHAKNTRRGSAVLFNACHERQININASIEQTLK
QADISHEMSVVYQPIIDIRQGKPVGFEALARWESPTLGCVSPAEFFPIAERAGIVGLLTRPLLRKALDAASQWDRDLRLS
FNLSAYDLNLSESATLLIDIIENGKFDAGRIDFEITETAFTHDFTQVKRSIEMLRSRGCGISLDDFGIGYSSLTRLHSLP
LTKIKIDRSFVVGLDKTPASYKIVKSVLALSQDMGLECVVEGIETHDELAALQKLGGILVQGYICSPPLRESDVAEFIAR
TADTSAFQASGVFNF
>Mature_654_residues
PVFKFSKLVRELLTVRSDNPDLLKAQYRAFSSQMPMMYFILLSSSWALAITHFQSSPLYLTVGMPLLFTCLGGLRMVFWL
RNRSVEPTAEMAHAAMTCANRLAIVIAITFAVWCYMLLPYGDEYERSYVSFYMAITVMSCIFCLMYLRSAAVIVTIIVSV
SFIIFFISLEKIICIAVAVNIILVCAGIISVLLTNYRNFEQMVLSQHRAEALSNENLRLAHVDSLTELPNRRAFFSYLEF
ELTKASTVGSRVALGLIDLDGFKPINDLYGHSTGDRLLVEVGKRLLDLPEGHKIFRLGGDEFAVIATNSLDDEQFLSAAN
ALIERLHHPFHMAEATVQISASMGIAIYPDLTLTPDRLLDQADYALYHAKNTRRGSAVLFNACHERQININASIEQTLKQ
ADISHEMSVVYQPIIDIRQGKPVGFEALARWESPTLGCVSPAEFFPIAERAGIVGLLTRPLLRKALDAASQWDRDLRLSF
NLSAYDLNLSESATLLIDIIENGKFDAGRIDFEITETAFTHDFTQVKRSIEMLRSRGCGISLDDFGIGYSSLTRLHSLPL
TKIKIDRSFVVGLDKTPASYKIVKSVLALSQDMGLECVVEGIETHDELAALQKLGGILVQGYICSPPLRESDVAEFIART
ADTSAFQASGVFNF

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=424, Percent_Identity=32.7830188679245, Blast_Score=216, Evalue=4e-57,
Organism=Escherichia coli, GI87081921, Length=446, Percent_Identity=29.1479820627803, Blast_Score=180, Evalue=3e-46,
Organism=Escherichia coli, GI1790496, Length=241, Percent_Identity=34.0248962655602, Blast_Score=135, Evalue=8e-33,
Organism=Escherichia coli, GI87081845, Length=262, Percent_Identity=33.587786259542, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1787055, Length=248, Percent_Identity=31.4516129032258, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI226510982, Length=448, Percent_Identity=24.5535714285714, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI87081743, Length=244, Percent_Identity=33.6065573770492, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1786507, Length=243, Percent_Identity=27.1604938271605, Blast_Score=108, Evalue=9e-25,
Organism=Escherichia coli, GI1788849, Length=429, Percent_Identity=23.5431235431235, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87081980, Length=251, Percent_Identity=28.2868525896414, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI87081977, Length=159, Percent_Identity=35.8490566037736, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI1788502, Length=239, Percent_Identity=26.3598326359833, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1788956, Length=181, Percent_Identity=35.3591160220994, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87082096, Length=453, Percent_Identity=25.60706401766, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI145693134, Length=168, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=4e-17,
Organism=Escherichia coli, GI1788381, Length=161, Percent_Identity=33.5403726708075, Blast_Score=81, Evalue=3e-16,
Organism=Escherichia coli, GI1787262, Length=174, Percent_Identity=32.183908045977, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081881, Length=163, Percent_Identity=34.9693251533742, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1787056, Length=158, Percent_Identity=34.1772151898734, Blast_Score=69, Evalue=9e-13,
Organism=Escherichia coli, GI1786584, Length=252, Percent_Identity=26.5873015873016, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=28.0487804878049, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1787802, Length=162, Percent_Identity=32.0987654320988, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 72966; Mature: 72835

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS50883 EAL ; PS50887 GGDEF ; PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVFKFSKLVRELLTVRSDNPDLLKAQYRAFSSQMPMMYFILLSSSWALAITHFQSSPLY
CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEECCCCEE
LTVGMPLLFTCLGGLRMVFWLRNRSVEPTAEMAHAAMTCANRLAIVIAITFAVWCYMLLP
EEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YGDEYERSYVSFYMAITVMSCIFCLMYLRSAAVIVTIIVSVSFIIFFISLEKIICIAVAV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NIILVCAGIISVLLTNYRNFEQMVLSQHRAEALSNENLRLAHVDSLTELPNRRAFFSYLE
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCHHHHHHHHH
FELTKASTVGSRVALGLIDLDGFKPINDLYGHSTGDRLLVEVGKRLLDLPEGHKIFRLGG
HHHHHHHHCCCHHEEEEEECCCCCCHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEECC
DEFAVIATNSLDDEQFLSAANALIERLHHPFHMAEATVQISASMGIAIYPDLTLTPDRLL
CCEEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHEEEEEECCCEEECCCCCCCHHHHH
DQADYALYHAKNTRRGSAVLFNACHERQININASIEQTLKQADISHEMSVVYQPIIDIRQ
HHHHHHEEECCCCCCCCHHEEECCCCCEEEECCHHHHHHHHHCCHHHHHHHHHHHHHHCC
GKPVGFEALARWESPTLGCVSPAEFFPIAERAGIVGLLTRPLLRKALDAASQWDRDLRLS
CCCCCHHHHHHCCCCCCCCCCHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
FNLSAYDLNLSESATLLIDIIENGKFDAGRIDFEITETAFTHDFTQVKRSIEMLRSRGCG
EEEEEEECCCCCCCEEEEEEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCC
ISLDDFGIGYSSLTRLHSLPLTKIKIDRSFVVGLDKTPASYKIVKSVLALSQDMGLECVV
CCCCCCCCCHHHHHHHHCCCCEEEEECCEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHH
EGIETHDELAALQKLGGILVQGYICSPPLRESDVAEFIARTADTSAFQASGVFNF
HHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
PVFKFSKLVRELLTVRSDNPDLLKAQYRAFSSQMPMMYFILLSSSWALAITHFQSSPLY
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEECCCCEE
LTVGMPLLFTCLGGLRMVFWLRNRSVEPTAEMAHAAMTCANRLAIVIAITFAVWCYMLLP
EEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YGDEYERSYVSFYMAITVMSCIFCLMYLRSAAVIVTIIVSVSFIIFFISLEKIICIAVAV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NIILVCAGIISVLLTNYRNFEQMVLSQHRAEALSNENLRLAHVDSLTELPNRRAFFSYLE
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCHHHHHHHHH
FELTKASTVGSRVALGLIDLDGFKPINDLYGHSTGDRLLVEVGKRLLDLPEGHKIFRLGG
HHHHHHHHCCCHHEEEEEECCCCCCHHHHCCCCCCCHHHHHHHHHHHCCCCCCEEEEECC
DEFAVIATNSLDDEQFLSAANALIERLHHPFHMAEATVQISASMGIAIYPDLTLTPDRLL
CCEEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHEEEEEECCCEEECCCCCCCHHHHH
DQADYALYHAKNTRRGSAVLFNACHERQININASIEQTLKQADISHEMSVVYQPIIDIRQ
HHHHHHEEECCCCCCCCHHEEECCCCCEEEECCHHHHHHHHHCCHHHHHHHHHHHHHHCC
GKPVGFEALARWESPTLGCVSPAEFFPIAERAGIVGLLTRPLLRKALDAASQWDRDLRLS
CCCCCHHHHHHCCCCCCCCCCHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
FNLSAYDLNLSESATLLIDIIENGKFDAGRIDFEITETAFTHDFTQVKRSIEMLRSRGCG
EEEEEEECCCCCCCEEEEEEECCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCC
ISLDDFGIGYSSLTRLHSLPLTKIKIDRSFVVGLDKTPASYKIVKSVLALSQDMGLECVV
CCCCCCCCCHHHHHHHHCCCCEEEEECCEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHH
EGIETHDELAALQKLGGILVQGYICSPPLRESDVAEFIARTADTSAFQASGVFNF
HHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]