| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
Click here to switch to the map view.
The map label for this gene is hsaA [H]
Identifier: 222102726
GI number: 222102726
Start: 377643
End: 378932
Strand: Direct
Name: hsaA [H]
Synonym: Avi_7405
Alternate gene names: 222102726
Gene position: 377643-378932 (Clockwise)
Preceding gene: 222102725
Following gene: 222102727
Centisome position: 59.77
GC content: 56.9
Gene sequence:
>1290_bases GTGGTCGCTGCCAAAGAACGCACCGTGGTACTTGCCACAAAGAGCACTCAAAAACAGGGGACGCCATTGGCGCAACCTGA ACCCGGCCTCACACCAGAGCAAATTATACAGCGCGCCATTGACTTACGGCCGCTTTTGCTCGACGGCCAAGCCGACGCAG AAGAGCGAGGCACATATTCTCCTGAAATGCATGAGCGTTTTCGCAAGGCCGGTTTCTATCGAATCCTGCAACCTGTGATG TATGGCGGCTATGAGTTTGATCTGACCGTCTTTTCTCGTGTCATCGTCGAAATTGCACGGGGCTGCCCCGGTTCTGGCTG GTGTCTCTGCCTTGCTTCCGGGCATGCCGTAAATGCTGCAGCTTTGTTTGATAAGGCTGGCCAAGACATTATCTTTGGCA ATGACGGCGAATTTGCAGCCCCGGCCCGCGGCGTGCCAGGTGGGACAGCCACGGAGTGCGACGACGGCTGGATCATTGAC GGAACCTGGGATTATTGCTCCGGTTCGCCCTATAGCACACATGCTATCGTTGGCGTTCGCATCGCGGGTCCAGCGAAAGA CGGACCGCCTGAACTCGGAATTGCAATGGTTCCAAGATCTGGGTGGGAGATGATCGACAACTGGCGCGACTTCATCGGCA TGCGCGCCAGTGGCTCAAACAGTATCCGCATCGACAAGCAATGGATACCAAAGGCTCTGCTCGTTCGCCAAAACTTCTTC GCCGTCAATATCGATGGTGGCACCGAAGGTTACAAATTGCATGGCAACTCCATGTATTCAGGCCGTATGTTCGGCTTCTT CCAGGCGGAGATCACCTCAATTTTGGTTGGCGTTGGCTTTGCTGCGCTGGACGAATTCGAACGGATTGTGGGACTGCGGG CAGGGGCTCCGAAACTCGGACCTCCGATGCCGGGTGTACCGGACTTCCACCGCCCCTACGGCGTCGCACTGGGCATGCTT GAAATGGCATCCAATGCTCTGGCAGCCGGCACTCGTTCCTATCTCGACTATTGCGAACGTGGCGTGAAGGACCCCAGCGC TTATACGGAGTTCGATGATCTGCGCATTCAAGCAGGGTTGCAGCACGCAGCGCATCTGTCGATGGACGCGGTGGAGATCC TCTACAGTGCTGCCGGTACGAGCACCTCAGCGAAAAATGGCTCGCGGCTTCAGCGCTATTACCGTGACATTTCCATGGCG CGCACCAATCCCGGCCTGCAATTCGACAAAACGGCCATGCAGTTGGCTGCGCGGAGATTTCCAGAAGGACCGCAAGGCCC CCGCCCGTAA
Upstream 100 bases:
>100_bases GATTTTTGTACGCACGACGGACGTACATTGTCTGATCCTTGTTCGTCTTAAGTCGGCCTGACACGATGAATGAAGAGTTC AAAACAAGGAGCATTCAGAC
Downstream 100 bases:
>100_bases GCAACCGGAATTGGAAAACAGGCGCACGCGAAACTCAACGGGAGGTGGGTATGCAACATCACGTTCACACCAACAATGAT AAGGTTGCAGCGGACACCAA
Product: Acyl-CoA dehydrogenase
Products: NA
Alternate protein names: 3-hydroxy-9,10-seconandrost-1,3,5(10)-triene-9,17-dione 4-hydroxylase [H]
Number of amino acids: Translated: 429; Mature: 429
Protein sequence:
>429_residues MVAAKERTVVLATKSTQKQGTPLAQPEPGLTPEQIIQRAIDLRPLLLDGQADAEERGTYSPEMHERFRKAGFYRILQPVM YGGYEFDLTVFSRVIVEIARGCPGSGWCLCLASGHAVNAAALFDKAGQDIIFGNDGEFAAPARGVPGGTATECDDGWIID GTWDYCSGSPYSTHAIVGVRIAGPAKDGPPELGIAMVPRSGWEMIDNWRDFIGMRASGSNSIRIDKQWIPKALLVRQNFF AVNIDGGTEGYKLHGNSMYSGRMFGFFQAEITSILVGVGFAALDEFERIVGLRAGAPKLGPPMPGVPDFHRPYGVALGML EMASNALAAGTRSYLDYCERGVKDPSAYTEFDDLRIQAGLQHAAHLSMDAVEILYSAAGTSTSAKNGSRLQRYYRDISMA RTNPGLQFDKTAMQLAARRFPEGPQGPRP
Sequences:
>Translated_429_residues MVAAKERTVVLATKSTQKQGTPLAQPEPGLTPEQIIQRAIDLRPLLLDGQADAEERGTYSPEMHERFRKAGFYRILQPVM YGGYEFDLTVFSRVIVEIARGCPGSGWCLCLASGHAVNAAALFDKAGQDIIFGNDGEFAAPARGVPGGTATECDDGWIID GTWDYCSGSPYSTHAIVGVRIAGPAKDGPPELGIAMVPRSGWEMIDNWRDFIGMRASGSNSIRIDKQWIPKALLVRQNFF AVNIDGGTEGYKLHGNSMYSGRMFGFFQAEITSILVGVGFAALDEFERIVGLRAGAPKLGPPMPGVPDFHRPYGVALGML EMASNALAAGTRSYLDYCERGVKDPSAYTEFDDLRIQAGLQHAAHLSMDAVEILYSAAGTSTSAKNGSRLQRYYRDISMA RTNPGLQFDKTAMQLAARRFPEGPQGPRP >Mature_429_residues MVAAKERTVVLATKSTQKQGTPLAQPEPGLTPEQIIQRAIDLRPLLLDGQADAEERGTYSPEMHERFRKAGFYRILQPVM YGGYEFDLTVFSRVIVEIARGCPGSGWCLCLASGHAVNAAALFDKAGQDIIFGNDGEFAAPARGVPGGTATECDDGWIID GTWDYCSGSPYSTHAIVGVRIAGPAKDGPPELGIAMVPRSGWEMIDNWRDFIGMRASGSNSIRIDKQWIPKALLVRQNFF AVNIDGGTEGYKLHGNSMYSGRMFGFFQAEITSILVGVGFAALDEFERIVGLRAGAPKLGPPMPGVPDFHRPYGVALGML EMASNALAAGTRSYLDYCERGVKDPSAYTEFDDLRIQAGLQHAAHLSMDAVEILYSAAGTSTSAKNGSRLQRYYRDISMA RTNPGLQFDKTAMQLAARRFPEGPQGPRP
Specific function: Catalyzes the o-hydroxylation of 3-hydroxy-9,10- seconandrost-1,3,5(10)-triene-9,17-dione (3-HSA) to 3,4-dihydroxy- 9,10-seconandrost-1,3,5(10)-triene-9,17-dione (3,4-DHSA) in the catabolism of cholesterol [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the FADH(2)-utilizing monooxygenase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013107 - InterPro: IPR006092 - InterPro: IPR006091 - InterPro: IPR009075 - InterPro: IPR013786 - InterPro: IPR009100 [H]
Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02771 Acyl-CoA_dh_N [H]
EC number: NA
Molecular weight: Translated: 46540; Mature: 46540
Theoretical pI: Translated: 6.41; Mature: 6.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVAAKERTVVLATKSTQKQGTPLAQPEPGLTPEQIIQRAIDLRPLLLDGQADAEERGTYS CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCHHHCCCCC PEMHERFRKAGFYRILQPVMYGGYEFDLTVFSRVIVEIARGCPGSGWCLCLASGHAVNAA HHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHH ALFDKAGQDIIFGNDGEFAAPARGVPGGTATECDDGWIIDGTWDYCSGSPYSTHAIVGVR HHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEE IAGPAKDGPPELGIAMVPRSGWEMIDNWRDFIGMRASGSNSIRIDKQWIPKALLVRQNFF EECCCCCCCCCCCEEECCCCCHHHHHHHHHHHEEECCCCCCEEECHHHCCHHHHEECCEE AVNIDGGTEGYKLHGNSMYSGRMFGFFQAEITSILVGVGFAALDEFERIVGLRAGAPKLG EEEECCCCCCEEEECCCEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC PPMPGVPDFHRPYGVALGMLEMASNALAAGTRSYLDYCERGVKDPSAYTEFDDLRIQAGL CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHH QHAAHLSMDAVEILYSAAGTSTSAKNGSRLQRYYRDISMARTNPGLQFDKTAMQLAARRF HHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC PEGPQGPRP CCCCCCCCC >Mature Secondary Structure MVAAKERTVVLATKSTQKQGTPLAQPEPGLTPEQIIQRAIDLRPLLLDGQADAEERGTYS CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCHHHCCCCC PEMHERFRKAGFYRILQPVMYGGYEFDLTVFSRVIVEIARGCPGSGWCLCLASGHAVNAA HHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHH ALFDKAGQDIIFGNDGEFAAPARGVPGGTATECDDGWIIDGTWDYCSGSPYSTHAIVGVR HHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEE IAGPAKDGPPELGIAMVPRSGWEMIDNWRDFIGMRASGSNSIRIDKQWIPKALLVRQNFF EECCCCCCCCCCCEEECCCCCHHHHHHHHHHHEEECCCCCCEEECHHHCCHHHHEECCEE AVNIDGGTEGYKLHGNSMYSGRMFGFFQAEITSILVGVGFAALDEFERIVGLRAGAPKLG EEEECCCCCCEEEECCCEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC PPMPGVPDFHRPYGVALGMLEMASNALAAGTRSYLDYCERGVKDPSAYTEFDDLRIQAGL CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHH QHAAHLSMDAVEILYSAAGTSTSAKNGSRLQRYYRDISMARTNPGLQFDKTAMQLAARRF HHHHHCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC PEGPQGPRP CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA