| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102725
Identifier: 222102725
GI number: 222102725
Start: 376370
End: 377011
Strand: Direct
Name: 222102725
Synonym: Avi_7403
Alternate gene names: NA
Gene position: 376370-377011 (Clockwise)
Preceding gene: 222102724
Following gene: 222102726
Centisome position: 59.57
GC content: 54.67
Gene sequence:
>642_bases ATGACCAAAACACTTGGATTTCTTGGGGCAGGTCGCCTCGCACAGATGCTCGCACCAAAAGCGATAGCCGGTGGCTGGCG GGTTATTCTTTCGAACTCGCGTGGACCTGAAACATTGGCTGATTTGGTCTCTCAACTCGGACCAAATGCCAGCGCAGCCA CCAGCAAAGACATGGTGTTGGCCGCCGACATTATTATCCTTGCAATCCGGTGGCCACAAATCGCCGATGCCACAGCTGGT CTGCCCTGGGACGGCAAAACCGTGATTGATGCCACCAACAATCGTCTCGGCCCGAAGCCTGAAGATGTCATCGTCATCGG CGATGCAATCGCCAGTGAACTCGTCGCAGGTTATCTACCCGGTGCAAAGCTGGTCAAGGCTTTCAATCATGAGCCGATCC CTGTGTTCGACAAAACACTTCCTCCCGCCGGGGATGAAAGCGTGCTTTTTCTGGCTGGCGCAGATGCGGAGGCAAAGAAG CAAGTCGCGCAATTGATGCGGGATCTGAAGGCAACACCGATTGATCTTGGCGCGATTGACGAAGGCGGCTTGCTCATTGC CATGGGTGGCCCGCTGACGAACAAGTTCAAACTATACACACCCGCTGAAGCCGAAGCTGAAACAAAAGCTGCGCTTGTCT AA
Upstream 100 bases:
>100_bases TGCCTCACAGTCTAGCCCTTGCTTGATTGCATCAATATGGCCCGCCCACGAGGGGTTTCCTTCGTGGGCGGCCCCTATTG GCTCAGAGGAAGGACAAAGC
Downstream 100 bases:
>100_bases TACGAAGACACGGAGAACATGACTGTTCGTATTCTATTTTCGAATATCTCAATCATCTGATGCATTTGAGATATTCGGAA TTTTGCAAGACGAGGATGCG
Product: hypothetical protein
Products: NA
Alternate protein names: Oxidoreductase; 2-Dehydropantoate 2-Reductase; Myo-Inositol 2-Dehydrogenase Protein; Polyketide Synthase
Number of amino acids: Translated: 213; Mature: 212
Protein sequence:
>213_residues MTKTLGFLGAGRLAQMLAPKAIAGGWRVILSNSRGPETLADLVSQLGPNASAATSKDMVLAADIIILAIRWPQIADATAG LPWDGKTVIDATNNRLGPKPEDVIVIGDAIASELVAGYLPGAKLVKAFNHEPIPVFDKTLPPAGDESVLFLAGADAEAKK QVAQLMRDLKATPIDLGAIDEGGLLIAMGGPLTNKFKLYTPAEAEAETKAALV
Sequences:
>Translated_213_residues MTKTLGFLGAGRLAQMLAPKAIAGGWRVILSNSRGPETLADLVSQLGPNASAATSKDMVLAADIIILAIRWPQIADATAG LPWDGKTVIDATNNRLGPKPEDVIVIGDAIASELVAGYLPGAKLVKAFNHEPIPVFDKTLPPAGDESVLFLAGADAEAKK QVAQLMRDLKATPIDLGAIDEGGLLIAMGGPLTNKFKLYTPAEAEAETKAALV >Mature_212_residues TKTLGFLGAGRLAQMLAPKAIAGGWRVILSNSRGPETLADLVSQLGPNASAATSKDMVLAADIIILAIRWPQIADATAGL PWDGKTVIDATNNRLGPKPEDVIVIGDAIASELVAGYLPGAKLVKAFNHEPIPVFDKTLPPAGDESVLFLAGADAEAKKQ VAQLMRDLKATPIDLGAIDEGGLLIAMGGPLTNKFKLYTPAEAEAETKAALV
Specific function: Unknown
COG id: COG2085
COG function: function code R; Predicted dinucleotide-binding enzymes
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22129; Mature: 21998
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKTLGFLGAGRLAQMLAPKAIAGGWRVILSNSRGPETLADLVSQLGPNASAATSKDMVL CCCCCCCCCHHHHHHHHCCHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCEE AADIIILAIRWPQIADATAGLPWDGKTVIDATNNRLGPKPEDVIVIGDAIASELVAGYLP EEEEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEECHHHHHHHHHHHCC GAKLVKAFNHEPIPVFDKTLPPAGDESVLFLAGADAEAKKQVAQLMRDLKATPIDLGAID HHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCC EGGLLIAMGGPLTNKFKLYTPAEAEAETKAALV CCCEEEEECCCCCCCEEEECCCCCCCCHHHCCC >Mature Secondary Structure TKTLGFLGAGRLAQMLAPKAIAGGWRVILSNSRGPETLADLVSQLGPNASAATSKDMVL CCCCCCCCHHHHHHHHCCHHHCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCEE AADIIILAIRWPQIADATAGLPWDGKTVIDATNNRLGPKPEDVIVIGDAIASELVAGYLP EEEEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEECHHHHHHHHHHHCC GAKLVKAFNHEPIPVFDKTLPPAGDESVLFLAGADAEAKKQVAQLMRDLKATPIDLGAID HHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCC EGGLLIAMGGPLTNKFKLYTPAEAEAETKAALV CCCEEEEECCCCCCCEEEECCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA