The gene/protein map for NC_011981 is currently unavailable.
Definition Agrobacterium vitis S4 plasmid pAtS4e, complete sequence.
Accession NC_011981
Length 631,775

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The map label for this gene is rdh [H]

Identifier: 222102701

GI number: 222102701

Start: 350398

End: 351126

Strand: Reverse

Name: rdh [H]

Synonym: Avi_7375

Alternate gene names: 222102701

Gene position: 351126-350398 (Counterclockwise)

Preceding gene: 222102702

Following gene: 222102700

Centisome position: 55.58

GC content: 58.44

Gene sequence:

>729_bases
ATGACAGATATCATGAAAGGCAAAGTCGCCGCCATCACCGGTGCTGCATCGGGCATCGGTCTCGCTTGCGCCAAAATTCT
GCTGGCGGAAGGCGCAACGGTGGTGTTGATCGACCGCGCCAAGGATAAGCTGGATACGCTTTGCGCAGAGCTCGGTGAGC
GCGCCAAGCCGCTGGTGGTGGATCTTTTGAATGGGCCAGAGGTTTCCGCCATGCTGCCGCGCATTCTGGAGGTCGCAGGC
GGGCTTGATATTTTCCACGCCAATGCCGGAGCCTATATTGGCGGTGCCGTGGCAGAAGGCGACCCAGATGCGTGGGACCG
GATGCTCAACCTCAATATCAACGCAGCCTTCCGCTCAGTTCATGCGGTATTGCCGCATCTGATTGCGCAAAAATCCGGCG
ATATCCTGTTTACCAGCTCGATTGCAGGCGTGGTGCCAGTGGTGTGGGAGCCGATTTATACGGCCTCGAAATTTGCCGTT
CAGGCCTTTGTCCATTCCACCCGCAGGCAGGTTTCGCAATATGGCGTGCGCGTGGGTGCGGTGTTGCCCGGCCCAGTCGT
CACCGCATTGCTGGATGATTGGCCAAAAGCCAAGATGGATGAAGCGCTGGCCAATGGCAGCCTGATGCAGCCGCAGGAAG
TGGCCGAAGCCGTGCTGTTCATGCTGTCGCGGCCCCGCAATGTCACCATCCGTGATCTGGTGATTGTGCCCAACAGCGTC
GATCTTTAA

Upstream 100 bases:

>100_bases
GGGGCAGTGCTTGCCATTGCCGTGATTGTGGATTCGCTCGCGCGCCGCTCCCGTGTCAGTCACGGCCGCGCCTAACAAGA
TTTACAAGGAGAATTGTATC

Downstream 100 bases:

>100_bases
TCGACGCTCATCCTCATCCTCATCATTATCCCATCTATATTTGAAGAGCATTTGCCATGATCGAAGCACCTGACACCATC
GCGACCGGGCTTGAGCGCTA

Product: ribitol 2-dehydrogenase

Products: NA

Alternate protein names: RDH [H]

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MTDIMKGKVAAITGAASGIGLACAKILLAEGATVVLIDRAKDKLDTLCAELGERAKPLVVDLLNGPEVSAMLPRILEVAG
GLDIFHANAGAYIGGAVAEGDPDAWDRMLNLNINAAFRSVHAVLPHLIAQKSGDILFTSSIAGVVPVVWEPIYTASKFAV
QAFVHSTRRQVSQYGVRVGAVLPGPVVTALLDDWPKAKMDEALANGSLMQPQEVAEAVLFMLSRPRNVTIRDLVIVPNSV
DL

Sequences:

>Translated_242_residues
MTDIMKGKVAAITGAASGIGLACAKILLAEGATVVLIDRAKDKLDTLCAELGERAKPLVVDLLNGPEVSAMLPRILEVAG
GLDIFHANAGAYIGGAVAEGDPDAWDRMLNLNINAAFRSVHAVLPHLIAQKSGDILFTSSIAGVVPVVWEPIYTASKFAV
QAFVHSTRRQVSQYGVRVGAVLPGPVVTALLDDWPKAKMDEALANGSLMQPQEVAEAVLFMLSRPRNVTIRDLVIVPNSV
DL
>Mature_241_residues
TDIMKGKVAAITGAASGIGLACAKILLAEGATVVLIDRAKDKLDTLCAELGERAKPLVVDLLNGPEVSAMLPRILEVAGG
LDIFHANAGAYIGGAVAEGDPDAWDRMLNLNINAAFRSVHAVLPHLIAQKSGDILFTSSIAGVVPVVWEPIYTASKFAVQ
AFVHSTRRQVSQYGVRVGAVLPGPVVTALLDDWPKAKMDEALANGSLMQPQEVAEAVLFMLSRPRNVTIRDLVIVPNSVD
L

Specific function: Unknown

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI20149619, Length=246, Percent_Identity=32.1138211382114, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI109715829, Length=247, Percent_Identity=27.9352226720648, Blast_Score=90, Evalue=2e-18,
Organism=Homo sapiens, GI31542939, Length=204, Percent_Identity=30.8823529411765, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI32483357, Length=243, Percent_Identity=25.9259259259259, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI7706318, Length=223, Percent_Identity=28.2511210762332, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI5031737, Length=189, Percent_Identity=28.042328042328, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI7705855, Length=194, Percent_Identity=32.9896907216495, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI33667109, Length=189, Percent_Identity=28.042328042328, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI15277342, Length=251, Percent_Identity=27.4900398406374, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI224922801, Length=170, Percent_Identity=30.5882352941176, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI66933014, Length=186, Percent_Identity=29.0322580645161, Blast_Score=75, Evalue=5e-14,
Organism=Homo sapiens, GI157739938, Length=240, Percent_Identity=25.8333333333333, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI7657478, Length=187, Percent_Identity=31.5508021390374, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI40254992, Length=218, Percent_Identity=24.3119266055046, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI142976729, Length=241, Percent_Identity=25.7261410788382, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI223718074, Length=252, Percent_Identity=27.3809523809524, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI226371731, Length=199, Percent_Identity=29.6482412060301, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI7705925, Length=229, Percent_Identity=28.82096069869, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI87082100, Length=234, Percent_Identity=32.0512820512821, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787335, Length=222, Percent_Identity=28.3783783783784, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787820, Length=234, Percent_Identity=27.3504273504274, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87082160, Length=189, Percent_Identity=30.1587301587302, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1789208, Length=187, Percent_Identity=30.4812834224599, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787526, Length=196, Percent_Identity=30.1020408163265, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1786812, Length=248, Percent_Identity=25.4032258064516, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788459, Length=238, Percent_Identity=25.6302521008403, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786701, Length=210, Percent_Identity=26.1904761904762, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787905, Length=233, Percent_Identity=27.8969957081545, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1789378, Length=234, Percent_Identity=27.7777777777778, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI2367365, Length=224, Percent_Identity=30.3571428571429, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17560676, Length=232, Percent_Identity=29.7413793103448, Blast_Score=94, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17544670, Length=243, Percent_Identity=32.9218106995885, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17559104, Length=246, Percent_Identity=30.4878048780488, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17560150, Length=241, Percent_Identity=28.2157676348548, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17531453, Length=244, Percent_Identity=29.9180327868852, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71994600, Length=244, Percent_Identity=30.327868852459, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17562910, Length=247, Percent_Identity=30.3643724696356, Blast_Score=84, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI71994604, Length=243, Percent_Identity=29.6296296296296, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17562990, Length=241, Percent_Identity=27.8008298755187, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17538480, Length=248, Percent_Identity=28.6290322580645, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17562906, Length=242, Percent_Identity=29.3388429752066, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17560332, Length=241, Percent_Identity=29.4605809128631, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=240, Percent_Identity=27.5, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI193204405, Length=241, Percent_Identity=28.2157676348548, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17562908, Length=248, Percent_Identity=27.0161290322581, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17560220, Length=243, Percent_Identity=27.5720164609054, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17555706, Length=233, Percent_Identity=27.4678111587983, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI72000259, Length=247, Percent_Identity=25.9109311740891, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI25147288, Length=230, Percent_Identity=24.7826086956522, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=245, Percent_Identity=26.9387755102041, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17561402, Length=251, Percent_Identity=24.7011952191235, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17551412, Length=242, Percent_Identity=26.4462809917355, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=241, Percent_Identity=26.5560165975104, Blast_Score=68, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17565030, Length=248, Percent_Identity=27.4193548387097, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17564282, Length=193, Percent_Identity=27.4611398963731, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17508895, Length=197, Percent_Identity=27.4111675126904, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17570069, Length=173, Percent_Identity=30.0578034682081, Blast_Score=65, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=248, Percent_Identity=30.6451612903226, Blast_Score=79, Evalue=7e-16,
Organism=Saccharomyces cerevisiae, GI6322067, Length=192, Percent_Identity=28.6458333333333, Blast_Score=69, Evalue=8e-13,
Organism=Saccharomyces cerevisiae, GI6322227, Length=237, Percent_Identity=29.535864978903, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI23397609, Length=235, Percent_Identity=32.7659574468085, Blast_Score=97, Evalue=8e-21,
Organism=Drosophila melanogaster, GI28571387, Length=246, Percent_Identity=30.0813008130081, Blast_Score=94, Evalue=9e-20,
Organism=Drosophila melanogaster, GI24639444, Length=233, Percent_Identity=30.4721030042918, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI21357041, Length=232, Percent_Identity=29.7413793103448, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI21358495, Length=233, Percent_Identity=30.4721030042918, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI21355319, Length=235, Percent_Identity=31.063829787234, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI28571526, Length=238, Percent_Identity=29.8319327731092, Blast_Score=85, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24644339, Length=230, Percent_Identity=30, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI116007236, Length=246, Percent_Identity=27.6422764227642, Blast_Score=81, Evalue=5e-16,
Organism=Drosophila melanogaster, GI24641232, Length=248, Percent_Identity=29.0322580645161, Blast_Score=80, Evalue=8e-16,
Organism=Drosophila melanogaster, GI24641388, Length=247, Percent_Identity=29.5546558704453, Blast_Score=77, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24640442, Length=195, Percent_Identity=29.2307692307692, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24663911, Length=245, Percent_Identity=26.9387755102041, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI281364892, Length=226, Percent_Identity=27.8761061946903, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24580925, Length=200, Percent_Identity=30.5, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24643142, Length=224, Percent_Identity=30.3571428571429, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI17737361, Length=227, Percent_Identity=29.9559471365639, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24648944, Length=239, Percent_Identity=25.5230125523013, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24649181, Length=185, Percent_Identity=26.4864864864865, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI221331218, Length=240, Percent_Identity=26.25, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24665243, Length=199, Percent_Identity=28.1407035175879, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI21355631, Length=171, Percent_Identity=28.6549707602339, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI161076933, Length=196, Percent_Identity=26.0204081632653, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24584748, Length=232, Percent_Identity=24.5689655172414, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221331216, Length=240, Percent_Identity=25.8333333333333, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24665247, Length=199, Percent_Identity=27.6381909547739, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI116007238, Length=196, Percent_Identity=26.0204081632653, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24644337, Length=231, Percent_Identity=31.1688311688312, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI116007234, Length=251, Percent_Identity=25.4980079681275, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24584744, Length=197, Percent_Identity=27.4111675126904, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI28574402, Length=197, Percent_Identity=27.4111675126904, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: =1.1.1.56 [H]

Molecular weight: Translated: 25568; Mature: 25437

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MTDIMKGKVAAITGAASGIGLACAKILLAEGATVVLIDRAKDKLDTLCAELGERAKPLVV
CCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCCCEEE
DLLNGPEVSAMLPRILEVAGGLDIFHANAGAYIGGAVAEGDPDAWDRMLNLNINAAFRSV
EECCCCCHHHHHHHHHHHHCCCEEEECCCCCEECCCCCCCCHHHHHHHHCCCHHHHHHHH
HAVLPHLIAQKSGDILFTSSIAGVVPVVWEPIYTASKFAVQAFVHSTRRQVSQYGVRVGA
HHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECC
VLPGPVVTALLDDWPKAKMDEALANGSLMQPQEVAEAVLFMLSRPRNVTIRDLVIVPNSV
CCCHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCC
DL
CC
>Mature Secondary Structure 
TDIMKGKVAAITGAASGIGLACAKILLAEGATVVLIDRAKDKLDTLCAELGERAKPLVV
CCCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCCCEEE
DLLNGPEVSAMLPRILEVAGGLDIFHANAGAYIGGAVAEGDPDAWDRMLNLNINAAFRSV
EECCCCCHHHHHHHHHHHHCCCEEEECCCCCEECCCCCCCCHHHHHHHHCCCHHHHHHHH
HAVLPHLIAQKSGDILFTSSIAGVVPVVWEPIYTASKFAVQAFVHSTRRQVSQYGVRVGA
HHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECC
VLPGPVVTALLDDWPKAKMDEALANGSLMQPQEVAEAVLFMLSRPRNVTIRDLVIVPNSV
CCCHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCC
DL
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3904726; 2933028; 3891331 [H]