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The map label for this gene is xp55 [H]

Identifier: 222102549

GI number: 222102549

Start: 147070

End: 148698

Strand: Reverse

Name: xp55 [H]

Synonym: Avi_7181

Alternate gene names: 222102549

Gene position: 148698-147070 (Counterclockwise)

Preceding gene: 222102556

Following gene: 222102548

Centisome position: 23.54

GC content: 55.56

Gene sequence:

>1629_bases
ATGATCGTCAACCGCCCGTCTACCGAACACGCCGCCCATTCCACAACCCGTCGCGGCTTTCTGCTGGCATCGGCAGCAGT
CAGCGCATTTGCTGTGAGCGGCACAAATTTGCGCGCCGCAACGCCGGCAAAGGGTGGCACGGCAACGCTGCTTTTGTCGT
CTGAGCCTCCGGTTTTGACCACCATTGCCCATACCGCGTTCAACTCGGTCTATGTCTCGCCAAAGGTCACCGAGGGGTTG
CTGACCTATGATTTTGACCTCACGCCTAAGCCCTTGCTGGCAACTGAATGGCAGATCAGCCCGGACGGGCTGAAATATAC
GTTCAAACTGCGCGATGGGGTGAAATGGCATGATGGCAAGCCCTTCACCTCGGCAGATGTGGCGTTTTCCATCAAAACCA
TTGCCCAAGTCCATCCGCGTGGGCGCAACACATTCCTCAATTTGACGGAAGTGGAAACCCCGGATGCACGCACGGTGGTG
CTCGTGCTGTCCAAGCCAGCCCCCTATCTCATCACCGCCCTTGCCTCTTCCGAGACGCCGATTGTACCAAAGCATCTCTA
TGAAGGCACCAAAGTGCAGGAAAACCCGGTCAATCTTGCCCCTGTTGGCACCGGCCCCTACAAGTTCAAGCAATGGGTGC
GCGGCAGCCATATCGTTTATGTCCGCAATGAGGACTATTGGGACAAGCCCCGCCCCTATCTCGACAGCCTGATCGTGCGC
TTCATCTCGGATTCGGCAGCGCGGTCGATTGCGATTGAGGCGGGTGAGATTGATCTGGCGCCAAGCACACCGGTGTCCTA
CGGCGACCTGGATCGGTTGAAAGCCTTGCCGCATATCGGCTTTGAAACGCAGGGCTACCAATACTCCAACGGTGTCACGC
GGGTTGAATTCAATCTGGAAAAAGAGTTTTTCAAGGATGTGCGGGTGCGCCGCGCCTTCGCTCATGTGATTGATCGCAAT
GTGATTTTCAACACGGTCAATTACGGCTATGGCGCGCCGATTACCGGCCCCATCAATCCCAAACTGTCAAAATGGTATGT
TTCGGACCTGAAGACCTATCCCATTGATCTCAAAGCAGCGGAAGCCCTGCTGGATGACGCTGGCTATAAGCGTGGGCCAG
ATGGCATTCGCGCCCGCCTCAAACTCGATTATGTACCGGGTGAAGGCTATCCGCGTGGCGCGGATTATATTCGTCAAGCA
CTGGCCAAGGTGGGCATTGAGGTCACAGTGCGCACACAGGATTTCGCCACCTATACCAAACGCATCTACACTGACCGTGA
TTTCGATTTTGCCTATGAAGGCATGAGCAATCTGTTTGATCCCACCGTGGGTGTACAGCGGCTTTATTGGAGCAAGAACT
TCCTAAAAGGCGTGCCTTTCTCCAATGGTGCGGCCTATAGCAACCCGAAAGTCGATGCCCTGCTGGAAGCAGCAGCGGTG
GAGATTGATCCGAAAAAGCGCGTGGCGCAGTGGAAGGAAATCCAGCAGATTCTGGTGGAGGATGTGCCTGCCATCGATAT
CGCTGCGGCTCCCGAAATCACCATTTATAACAAGCGTATCGCCGATCACACGCTGGGCGCGGAAGGCATCATCAGCAGCC
TCGCCTTCGCCTATATCGCGTCAACGTAA

Upstream 100 bases:

>100_bases
ACTACGAAAGCGTTGCGCGACAGAAGAATTTTCACTTAGCCATCCAGCTATTGGAAAATGTCGCTCTGGTTGCAGCCTGC
CCACGCAGCGAGGGAAAACA

Downstream 100 bases:

>100_bases
GGCTGGATTTCTCAAGGTTTTCGCCGGGCGTTGAGCCGGTTTCATCTCCTGTTTGTTGAGGATATTATGGTCACTCCCAT
CTCCAAACTCTGGTATACGC

Product: ABC transporter substrate binding protein (oligopeptide)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 542; Mature: 542

Protein sequence:

>542_residues
MIVNRPSTEHAAHSTTRRGFLLASAAVSAFAVSGTNLRAATPAKGGTATLLLSSEPPVLTTIAHTAFNSVYVSPKVTEGL
LTYDFDLTPKPLLATEWQISPDGLKYTFKLRDGVKWHDGKPFTSADVAFSIKTIAQVHPRGRNTFLNLTEVETPDARTVV
LVLSKPAPYLITALASSETPIVPKHLYEGTKVQENPVNLAPVGTGPYKFKQWVRGSHIVYVRNEDYWDKPRPYLDSLIVR
FISDSAARSIAIEAGEIDLAPSTPVSYGDLDRLKALPHIGFETQGYQYSNGVTRVEFNLEKEFFKDVRVRRAFAHVIDRN
VIFNTVNYGYGAPITGPINPKLSKWYVSDLKTYPIDLKAAEALLDDAGYKRGPDGIRARLKLDYVPGEGYPRGADYIRQA
LAKVGIEVTVRTQDFATYTKRIYTDRDFDFAYEGMSNLFDPTVGVQRLYWSKNFLKGVPFSNGAAYSNPKVDALLEAAAV
EIDPKKRVAQWKEIQQILVEDVPAIDIAAAPEITIYNKRIADHTLGAEGIISSLAFAYIAST

Sequences:

>Translated_542_residues
MIVNRPSTEHAAHSTTRRGFLLASAAVSAFAVSGTNLRAATPAKGGTATLLLSSEPPVLTTIAHTAFNSVYVSPKVTEGL
LTYDFDLTPKPLLATEWQISPDGLKYTFKLRDGVKWHDGKPFTSADVAFSIKTIAQVHPRGRNTFLNLTEVETPDARTVV
LVLSKPAPYLITALASSETPIVPKHLYEGTKVQENPVNLAPVGTGPYKFKQWVRGSHIVYVRNEDYWDKPRPYLDSLIVR
FISDSAARSIAIEAGEIDLAPSTPVSYGDLDRLKALPHIGFETQGYQYSNGVTRVEFNLEKEFFKDVRVRRAFAHVIDRN
VIFNTVNYGYGAPITGPINPKLSKWYVSDLKTYPIDLKAAEALLDDAGYKRGPDGIRARLKLDYVPGEGYPRGADYIRQA
LAKVGIEVTVRTQDFATYTKRIYTDRDFDFAYEGMSNLFDPTVGVQRLYWSKNFLKGVPFSNGAAYSNPKVDALLEAAAV
EIDPKKRVAQWKEIQQILVEDVPAIDIAAAPEITIYNKRIADHTLGAEGIISSLAFAYIAST
>Mature_542_residues
MIVNRPSTEHAAHSTTRRGFLLASAAVSAFAVSGTNLRAATPAKGGTATLLLSSEPPVLTTIAHTAFNSVYVSPKVTEGL
LTYDFDLTPKPLLATEWQISPDGLKYTFKLRDGVKWHDGKPFTSADVAFSIKTIAQVHPRGRNTFLNLTEVETPDARTVV
LVLSKPAPYLITALASSETPIVPKHLYEGTKVQENPVNLAPVGTGPYKFKQWVRGSHIVYVRNEDYWDKPRPYLDSLIVR
FISDSAARSIAIEAGEIDLAPSTPVSYGDLDRLKALPHIGFETQGYQYSNGVTRVEFNLEKEFFKDVRVRRAFAHVIDRN
VIFNTVNYGYGAPITGPINPKLSKWYVSDLKTYPIDLKAAEALLDDAGYKRGPDGIRARLKLDYVPGEGYPRGADYIRQA
LAKVGIEVTVRTQDFATYTKRIYTDRDFDFAYEGMSNLFDPTVGVQRLYWSKNFLKGVPFSNGAAYSNPKVDALLEAAAV
EIDPKKRVAQWKEIQQILVEDVPAIDIAAAPEITIYNKRIADHTLGAEGIISSLAFAYIAST

Specific function: Required for transport of an unidentified substrate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787052, Length=458, Percent_Identity=25.9825327510917, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI1789966, Length=443, Percent_Identity=27.313769751693, Blast_Score=140, Evalue=3e-34,
Organism=Escherichia coli, GI1787762, Length=415, Percent_Identity=28.1927710843373, Blast_Score=122, Evalue=7e-29,
Organism=Escherichia coli, GI1789397, Length=475, Percent_Identity=27.3684210526316, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI87081878, Length=524, Percent_Identity=26.7175572519084, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787495, Length=534, Percent_Identity=25.6554307116105, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1789887, Length=423, Percent_Identity=24.822695035461, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI87082063, Length=410, Percent_Identity=22.9268292682927, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1787551, Length=481, Percent_Identity=22.2453222453222, Blast_Score=72, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 59915; Mature: 59915

Theoretical pI: Translated: 8.97; Mature: 8.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVNRPSTEHAAHSTTRRGFLLASAAVSAFAVSGTNLRAATPAKGGTATLLLSSEPPVLT
CCCCCCCCCHHHHHHHHCCEEEEHHHHHHEEECCCCEEECCCCCCCEEEEEECCCCCEEE
TIAHTAFNSVYVSPKVTEGLLTYDFDLTPKPLLATEWQISPDGLKYTFKLRDGVKWHDGK
HHHHHHHCEEEECCCCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCEECCCC
PFTSADVAFSIKTIAQVHPRGRNTFLNLTEVETPDARTVVLVLSKPAPYLITALASSETP
CCCCCCCEEEEEHHHHHCCCCCCEEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCC
IVPKHLYEGTKVQENPVNLAPVGTGPYKFKQWVRGSHIVYVRNEDYWDKPRPYLDSLIVR
CCHHHHCCCCCCCCCCCEEEECCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHH
FISDSAARSIAIEAGEIDLAPSTPVSYGDLDRLKALPHIGFETQGYQYSNGVTRVEFNLE
HHHCCCCCEEEEECCCEECCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCEEEEEEECC
KEFFKDVRVRRAFAHVIDRNVIFNTVNYGYGAPITGPINPKLSKWYVSDLKTYPIDLKAA
HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHH
EALLDDAGYKRGPDGIRARLKLDYVPGEGYPRGADYIRQALAKVGIEVTVRTQDFATYTK
HHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEHHHHHHHH
RIYTDRDFDFAYEGMSNLFDPTVGVQRLYWSKNFLKGVPFSNGAAYSNPKVDALLEAAAV
HHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHE
EIDPKKRVAQWKEIQQILVEDVPAIDIAAAPEITIYNKRIADHTLGAEGIISSLAFAYIA
EECCHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCHHHHCCCHHHHHHHHHHHHHC
ST
CC
>Mature Secondary Structure
MIVNRPSTEHAAHSTTRRGFLLASAAVSAFAVSGTNLRAATPAKGGTATLLLSSEPPVLT
CCCCCCCCCHHHHHHHHCCEEEEHHHHHHEEECCCCEEECCCCCCCEEEEEECCCCCEEE
TIAHTAFNSVYVSPKVTEGLLTYDFDLTPKPLLATEWQISPDGLKYTFKLRDGVKWHDGK
HHHHHHHCEEEECCCCCCCEEEEECCCCCCCCEEEEEEECCCCEEEEEEECCCCEECCCC
PFTSADVAFSIKTIAQVHPRGRNTFLNLTEVETPDARTVVLVLSKPAPYLITALASSETP
CCCCCCCEEEEEHHHHHCCCCCCEEEEEEECCCCCCEEEEEEECCCCCEEEEEECCCCCC
IVPKHLYEGTKVQENPVNLAPVGTGPYKFKQWVRGSHIVYVRNEDYWDKPRPYLDSLIVR
CCHHHHCCCCCCCCCCCEEEECCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHH
FISDSAARSIAIEAGEIDLAPSTPVSYGDLDRLKALPHIGFETQGYQYSNGVTRVEFNLE
HHHCCCCCEEEEECCCEECCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCEEEEEEECC
KEFFKDVRVRRAFAHVIDRNVIFNTVNYGYGAPITGPINPKLSKWYVSDLKTYPIDLKAA
HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCHHHH
EALLDDAGYKRGPDGIRARLKLDYVPGEGYPRGADYIRQALAKVGIEVTVRTQDFATYTK
HHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEEHHHHHHHH
RIYTDRDFDFAYEGMSNLFDPTVGVQRLYWSKNFLKGVPFSNGAAYSNPKVDALLEAAAV
HHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHE
EIDPKKRVAQWKEIQQILVEDVPAIDIAAAPEITIYNKRIADHTLGAEGIISSLAFAYIA
EECCHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEECCHHHHCCCHHHHHHHHHHHHHC
ST
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3453116 [H]