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The map label for this gene is yiaD [H]

Identifier: 222102518

GI number: 222102518

Start: 112177

End: 113175

Strand: Reverse

Name: yiaD [H]

Synonym: Avi_7144

Alternate gene names: 222102518

Gene position: 113175-112177 (Counterclockwise)

Preceding gene: 222102520

Following gene: 222102515

Centisome position: 17.91

GC content: 57.86

Gene sequence:

>999_bases
ATGTCTGGATTCCGAACAGGCCTCGCGACCCTCGCTCTCATCACGGTCCTGGGCTTACCGAAATTCGCCGCGGCCGAAGC
GCCGTCGCAGGATATTGAAGGCGGCAAGGACAATCCGATTGTGTCGCGTTTTTCTGGTGCGGTGATTATTGGTTACCAAC
AGCAGGACTACGCAGCGCTGACCTTGCCACTGGGACCGTATGACGCCAGCCAGAAAAGCCACTTTGCCAAGAGCAAGACC
GTTGAAGGCCGCCTGACCAGCATCGCATACGCCATCCCCGAAGGAAAAACGGCGCTAGAAGTCTATCGCAATTACGAACA
GACATTGAGGGCAGCTGGTTTTCAGCCGGCCTACCAGTGTGAAGGCAGCGCCTGCGGTGGCTATGACTTTGCCGCAGCAC
TTGCCGACCCGATCAATCACGCCATGGGTGACAACCTTTTCAATCTCAGGATTGATCTGATCAACGCCACCGATGGAAAC
GTGCGGGCGATGACGGCTCATCTGGAGCGCCCCCAAGGGCCCGTCGACGTTTCCTTGCTGGTAAGCCAGGATAGCGGTAG
ACAGCCCGGTTTGCTGCTACAAATCCTGGAAGGCCGCGCTATGGAGACGGGTGAGGTCACTGCGGACGCCCAGGCAATGA
GTGATAGTCTGGCCAAAACCGGCCACATCGCGCTCTATGGCATCCAGTTCGAAACTGATAGCGCAGCCTTGAAGGCGGAA
TCGGACAAAACGCTGGCACAGATGGCCGAGTTTCTGACGCAGGACGTGAGCCGAAAGGTCTATATCGTTGGCCATACCGA
CAGTTCAGGGGCTTTGGAGCGCAATATGAACCTTTCGCAGGCGCGTGCGGCGGCTGTCGTGAAAGCTTTGACAGCCAAAT
TCGGTATCGACTCTGATCGGCTTCAGCCCAAGGGCATCGGTCCCTATGCGCCGGCGGCCAGCAATGCAAACGACGCGGGT
CGGGCCAAGAACCGCCGGGTTGAAATGGTCGAGAGATAG

Upstream 100 bases:

>100_bases
GGGGCCGGGCAATTAGCACAAGAGTACTAATTGCCTTTCCTTGCTTGCGGTTTATCCCCTGTGAGCATTGTCAGTTTCGC
ACCAACGAAAGGACCTTAAC

Downstream 100 bases:

>100_bases
ATGAATGATGTTGAGGATTTTAAAGGGGTCGTGGGAGCCTTCTCACTCTCGATCGATGATCTCGTTGAGATTCTGTACCC
GTTTGTTTCTTATCGTCGGT

Product: OmpA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 331

Protein sequence:

>332_residues
MSGFRTGLATLALITVLGLPKFAAAEAPSQDIEGGKDNPIVSRFSGAVIIGYQQQDYAALTLPLGPYDASQKSHFAKSKT
VEGRLTSIAYAIPEGKTALEVYRNYEQTLRAAGFQPAYQCEGSACGGYDFAAALADPINHAMGDNLFNLRIDLINATDGN
VRAMTAHLERPQGPVDVSLLVSQDSGRQPGLLLQILEGRAMETGEVTADAQAMSDSLAKTGHIALYGIQFETDSAALKAE
SDKTLAQMAEFLTQDVSRKVYIVGHTDSSGALERNMNLSQARAAAVVKALTAKFGIDSDRLQPKGIGPYAPAASNANDAG
RAKNRRVEMVER

Sequences:

>Translated_332_residues
MSGFRTGLATLALITVLGLPKFAAAEAPSQDIEGGKDNPIVSRFSGAVIIGYQQQDYAALTLPLGPYDASQKSHFAKSKT
VEGRLTSIAYAIPEGKTALEVYRNYEQTLRAAGFQPAYQCEGSACGGYDFAAALADPINHAMGDNLFNLRIDLINATDGN
VRAMTAHLERPQGPVDVSLLVSQDSGRQPGLLLQILEGRAMETGEVTADAQAMSDSLAKTGHIALYGIQFETDSAALKAE
SDKTLAQMAEFLTQDVSRKVYIVGHTDSSGALERNMNLSQARAAAVVKALTAKFGIDSDRLQPKGIGPYAPAASNANDAG
RAKNRRVEMVER
>Mature_331_residues
SGFRTGLATLALITVLGLPKFAAAEAPSQDIEGGKDNPIVSRFSGAVIIGYQQQDYAALTLPLGPYDASQKSHFAKSKTV
EGRLTSIAYAIPEGKTALEVYRNYEQTLRAAGFQPAYQCEGSACGGYDFAAALADPINHAMGDNLFNLRIDLINATDGNV
RAMTAHLERPQGPVDVSLLVSQDSGRQPGLLLQILEGRAMETGEVTADAQAMSDSLAKTGHIALYGIQFETDSAALKAES
DKTLAQMAEFLTQDVSRKVYIVGHTDSSGALERNMNLSQARAAAVVKALTAKFGIDSDRLQPKGIGPYAPAASNANDAGR
AKNRRVEMVER

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=102, Percent_Identity=41.1764705882353, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 35312; Mature: 35181

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGFRTGLATLALITVLGLPKFAAAEAPSQDIEGGKDNPIVSRFSGAVIIGYQQQDYAAL
CCCHHHHHHHHHHHHHHCCCCHHHCCCCCHHCCCCCCCCHHHCCCCEEEEEEECCCCEEE
TLPLGPYDASQKSHFAKSKTVEGRLTSIAYAIPEGKTALEVYRNYEQTLRAAGFQPAYQC
EEECCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHCC
EGSACGGYDFAAALADPINHAMGDNLFNLRIDLINATDGNVRAMTAHLERPQGPVDVSLL
CCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEE
VSQDSGRQPGLLLQILEGRAMETGEVTADAQAMSDSLAKTGHIALYGIQFETDSAALKAE
EECCCCCCCCHHHEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCEEECC
SDKTLAQMAEFLTQDVSRKVYIVGHTDSSGALERNMNLSQARAAAVVKALTAKFGIDSDR
CHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
LQPKGIGPYAPAASNANDAGRAKNRRVEMVER
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC
>Mature Secondary Structure 
SGFRTGLATLALITVLGLPKFAAAEAPSQDIEGGKDNPIVSRFSGAVIIGYQQQDYAAL
CCHHHHHHHHHHHHHHCCCCHHHCCCCCHHCCCCCCCCHHHCCCCEEEEEEECCCCEEE
TLPLGPYDASQKSHFAKSKTVEGRLTSIAYAIPEGKTALEVYRNYEQTLRAAGFQPAYQC
EEECCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHCC
EGSACGGYDFAAALADPINHAMGDNLFNLRIDLINATDGNVRAMTAHLERPQGPVDVSLL
CCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEEEE
VSQDSGRQPGLLLQILEGRAMETGEVTADAQAMSDSLAKTGHIALYGIQFETDSAALKAE
EECCCCCCCCHHHEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCEEECC
SDKTLAQMAEFLTQDVSRKVYIVGHTDSSGALERNMNLSQARAAAVVKALTAKFGIDSDR
CHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
LQPKGIGPYAPAASNANDAGRAKNRRVEMVER
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]