| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102515
Identifier: 222102515
GI number: 222102515
Start: 109685
End: 109978
Strand: Reverse
Name: 222102515
Synonym: Avi_7136
Alternate gene names: NA
Gene position: 109978-109685 (Counterclockwise)
Preceding gene: 222102518
Following gene: 222102514
Centisome position: 17.41
GC content: 52.72
Gene sequence:
>294_bases TTGACAAACTTTGCCAAAATCGAATATGATTCCTTCAAATGGAGGTTTCCCATGGCAACAATGAACGTATCTCTTCCAGA CCCGATGAAGGATTGGGTGGAGGCGCAGGCCAGGACTGGGCGATATTCGAACGCTAGCGACTACGTGCGCGACCTGATCC GACGCGACCAGACACGAAACGACAAGATTGCCGCCATGCAAGGTTTCGTCGAGGCCGGGCTCCAAAGTGGCGTTGGCATT CGATCAAAGGATGAACTCTTTGCTGAGGCGATGGATCGTGCCAGCAAGTCATGA
Upstream 100 bases:
>100_bases AAACCGATGCTCTGTCCACCTGATAGTTCTATAAACAGGCGTTATCCCACCGGCAGAGAGAATGGGGGACGGTTCTGATC CCATGCAGATGTAGGAAAAT
Downstream 100 bases:
>100_bases GTTTTAAACTTTCTGTCGAGGCAGAAGAAGACATCATTACGATCGCCGAGCAGGGTGCCCGTATGTTCGGAGTAGACCAG GCAAAACGCTACCATGATGA
Product: hypothetical protein
Products: NA
Alternate protein names: Addiction Module Antidote Protein CopG/Arc/MetJ Family; Addiction Module Antidote Protein; Addiction Module Antidote Protein Family; CopG/Arc/MetJ Family Transcriptional Regulator; Helix-Turn-Helix Protein CopG; Antitoxin
Number of amino acids: Translated: 97; Mature: 96
Protein sequence:
>97_residues MTNFAKIEYDSFKWRFPMATMNVSLPDPMKDWVEAQARTGRYSNASDYVRDLIRRDQTRNDKIAAMQGFVEAGLQSGVGI RSKDELFAEAMDRASKS
Sequences:
>Translated_97_residues MTNFAKIEYDSFKWRFPMATMNVSLPDPMKDWVEAQARTGRYSNASDYVRDLIRRDQTRNDKIAAMQGFVEAGLQSGVGI RSKDELFAEAMDRASKS >Mature_96_residues TNFAKIEYDSFKWRFPMATMNVSLPDPMKDWVEAQARTGRYSNASDYVRDLIRRDQTRNDKIAAMQGFVEAGLQSGVGIR SKDELFAEAMDRASKS
Specific function: Unknown
COG id: COG3609
COG function: function code K; Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11089; Mature: 10957
Theoretical pI: Translated: 8.97; Mature: 8.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 6.2 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.2 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNFAKIEYDSFKWRFPMATMNVSLPDPMKDWVEAQARTGRYSNASDYVRDLIRRDQTRN CCCCCCEECCCEEEECCCEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC DKIAAMQGFVEAGLQSGVGIRSKDELFAEAMDRASKS CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure TNFAKIEYDSFKWRFPMATMNVSLPDPMKDWVEAQARTGRYSNASDYVRDLIRRDQTRN CCCCCEECCCEEEECCCEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCC DKIAAMQGFVEAGLQSGVGIRSKDELFAEAMDRASKS CHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA