Click here to switch to the map view.

The map label for this gene is 222102509

Identifier: 222102509

GI number: 222102509

Start: 104155

End: 105462

Strand: Direct

Name: 222102509

Synonym: Avi_7129

Alternate gene names: NA

Gene position: 104155-105462 (Clockwise)

Preceding gene: 222102508

Following gene: 222102510

Centisome position: 16.49

GC content: 55.35

Gene sequence:

>1308_bases
ATGGAGCATCAGATGAGCAACCAAAAGCGCAAGGGGATAACACGGCGCGGATTGATCAAAGGCGCGGCAGCGGTGGGCGG
CATGGCCGCCGGGTCCGGGGCCATATCTGGATTTCCAACAATCTGGGCGCAGAATATCAAGGACATCAAGCTGGTCCATG
TTGGCCAGTCCTATTCCACCATCAAGAATATTCAGGAACAGGCCAGCAAGGATCTCGGCTTTACCATTGAAATGCAGACG
GCAGACGTCGCCACCCAGATGAACCGGATGCTGACCCAGCCGGAATCGATGGATGTCGCCGACCTTGCCAATACGTCTGT
ACGCTATCTGCTCGGCCGCAATATTGTTCAGCCTGTCACCACCAAGGAATATAAATGGTGGGATAAGACCATTTCCCTGT
TTCAGACAGGTAAATACCCCAATGGTAAAATGGCCTCGCTGGAAGGATTTGCACCGATCAAGGCGCAATATTATGCCAAT
AAGACCGCCAGCGCCTATTCAATGACGCCGACAGAATGGCTGGTGGGCATTCCGCTCTATTATAATGCCGATACGCTGGG
TGTGCGGCCCGATCTGATCGGCTCCACCAAAATCGACAGTTGGGCACGCCTGCTGGACCCTGCCTTCAAGGGCCATGTGG
CGCTTCAGGAGGGGGTCAATGTCGGCTTGCCGGATGCCGCCATGGCGCTGTCCGCCCTGGGCGAGGTCTCCTATGTTGAC
AAGGGCAATATGACCCGCAGCGAAATCGACAAAACCATCAAGAAACTGATTGAATACAAAAAAGCCGGGCAATTCCGCTC
CTTCTGGCTGAATTTCGATCAATCCGTGCAGCTGATGGCCTCCGGCGAAGTGGTGCTGCAATCCATGTGGTCGCCTGCTG
TGACGGAGGTGCGTACGCGCGGTATTGCCTGCACGTTCCAACCGCTGAAAGAGGGCCATCGCGGCTGGTACATCATGATG
TTCCAGATGCAGCATCTGACCGGGCTGAAGCGCGAATGCGCCATCGAGTATATGAACTGGTACAATTCCGGCTGGGCCGG
CGCCTTCATTTCCCGCCAAGGCTTTTACAATACCGTACCTGAAAATGTGAAGCCGCTGATGAGCGCCAATGAATATGGCT
ATTGGTATGAGGGCAAGCCCGCGTCTGAACCTATTCTCAACCCCTTTGGCAAGGTGATGGAAAAGCCGGGTGCGGTGCGC
GACGGCGGCTCACTCTGGGATCGCATGGGCAATATCGGCATCTGGAACACGCTAATGGATGAGGATCGCTATCTGGTGCG
CCGCTGGCAGGATTTCATCGCCGCGTAA

Upstream 100 bases:

>100_bases
TATGACACCCGCTGAGTGAGATTTTCATGAGGCGCGAGGCACCAAGTATAGTTCGTACTGATCATAAAAACGGGAACAGA
AGCACGGCAAAAGCCGGCAT

Downstream 100 bases:

>100_bases
AATTTCATTCCAACCAAGGACATTTACGATGTCACTCTCCTCGGCAAAGCGGGTATCGCTTTTGCAAATCGCGCCTATGG
CGCTGGTTCTGGTGTGTTTC

Product: ABC transporter substrate binding protein (spermidine/putrescine)

Products: NA

Alternate protein names: Spermidine/Putrescine ABC Transporter; Signal Peptide Prediction; Tat Pathway Signal Sequence Domain Protein; Signal Peptide; Conserved Protein

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MEHQMSNQKRKGITRRGLIKGAAAVGGMAAGSGAISGFPTIWAQNIKDIKLVHVGQSYSTIKNIQEQASKDLGFTIEMQT
ADVATQMNRMLTQPESMDVADLANTSVRYLLGRNIVQPVTTKEYKWWDKTISLFQTGKYPNGKMASLEGFAPIKAQYYAN
KTASAYSMTPTEWLVGIPLYYNADTLGVRPDLIGSTKIDSWARLLDPAFKGHVALQEGVNVGLPDAAMALSALGEVSYVD
KGNMTRSEIDKTIKKLIEYKKAGQFRSFWLNFDQSVQLMASGEVVLQSMWSPAVTEVRTRGIACTFQPLKEGHRGWYIMM
FQMQHLTGLKRECAIEYMNWYNSGWAGAFISRQGFYNTVPENVKPLMSANEYGYWYEGKPASEPILNPFGKVMEKPGAVR
DGGSLWDRMGNIGIWNTLMDEDRYLVRRWQDFIAA

Sequences:

>Translated_435_residues
MEHQMSNQKRKGITRRGLIKGAAAVGGMAAGSGAISGFPTIWAQNIKDIKLVHVGQSYSTIKNIQEQASKDLGFTIEMQT
ADVATQMNRMLTQPESMDVADLANTSVRYLLGRNIVQPVTTKEYKWWDKTISLFQTGKYPNGKMASLEGFAPIKAQYYAN
KTASAYSMTPTEWLVGIPLYYNADTLGVRPDLIGSTKIDSWARLLDPAFKGHVALQEGVNVGLPDAAMALSALGEVSYVD
KGNMTRSEIDKTIKKLIEYKKAGQFRSFWLNFDQSVQLMASGEVVLQSMWSPAVTEVRTRGIACTFQPLKEGHRGWYIMM
FQMQHLTGLKRECAIEYMNWYNSGWAGAFISRQGFYNTVPENVKPLMSANEYGYWYEGKPASEPILNPFGKVMEKPGAVR
DGGSLWDRMGNIGIWNTLMDEDRYLVRRWQDFIAA
>Mature_435_residues
MEHQMSNQKRKGITRRGLIKGAAAVGGMAAGSGAISGFPTIWAQNIKDIKLVHVGQSYSTIKNIQEQASKDLGFTIEMQT
ADVATQMNRMLTQPESMDVADLANTSVRYLLGRNIVQPVTTKEYKWWDKTISLFQTGKYPNGKMASLEGFAPIKAQYYAN
KTASAYSMTPTEWLVGIPLYYNADTLGVRPDLIGSTKIDSWARLLDPAFKGHVALQEGVNVGLPDAAMALSALGEVSYVD
KGNMTRSEIDKTIKKLIEYKKAGQFRSFWLNFDQSVQLMASGEVVLQSMWSPAVTEVRTRGIACTFQPLKEGHRGWYIMM
FQMQHLTGLKRECAIEYMNWYNSGWAGAFISRQGFYNTVPENVKPLMSANEYGYWYEGKPASEPILNPFGKVMEKPGAVR
DGGSLWDRMGNIGIWNTLMDEDRYLVRRWQDFIAA

Specific function: Unknown

COG id: COG0687

COG function: function code E; Spermidine/putrescine-binding periplasmic protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48755; Mature: 48755

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHQMSNQKRKGITRRGLIKGAAAVGGMAAGSGAISGFPTIWAQNIKDIKLVHVGQSYST
CCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCEEEEEECCHHHH
IKNIQEQASKDLGFTIEMQTADVATQMNRMLTQPESMDVADLANTSVRYLLGRNIVQPVT
HHHHHHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
TKEYKWWDKTISLFQTGKYPNGKMASLEGFAPIKAQYYANKTASAYSMTPTEWLVGIPLY
CCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHCCCCCCCCCCCCHHHEEECCEE
YNADTLGVRPDLIGSTKIDSWARLLDPAFKGHVALQEGVNVGLPDAAMALSALGEVSYVD
ECCCCCCCCCCCCCCCCHHHHHHHHCHHHCCCEEHHCCCCCCCCHHHHHHHHHHCCEECC
KGNMTRSEIDKTIKKLIEYKKAGQFRSFWLNFDQSVQLMASGEVVLQSMWSPAVTEVRTR
CCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEEEECHHHHHHHHCCHHHHHHHHC
GIACTFQPLKEGHRGWYIMMFQMQHLTGLKRECAIEYMNWYNSGWAGAFISRQGFYNTVP
CEEEEEHHHHCCCCCEEEEEEEEHHHHCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCC
ENVKPLMSANEYGYWYEGKPASEPILNPFGKVMEKPGAVRDGGSLWDRMGNIGIWNTLMD
HHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHC
EDRYLVRRWQDFIAA
CHHHHHHHHHHHHCC
>Mature Secondary Structure
MEHQMSNQKRKGITRRGLIKGAAAVGGMAAGSGAISGFPTIWAQNIKDIKLVHVGQSYST
CCCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCEEEEEECCHHHH
IKNIQEQASKDLGFTIEMQTADVATQMNRMLTQPESMDVADLANTSVRYLLGRNIVQPVT
HHHHHHHHHCCCCEEEEECHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
TKEYKWWDKTISLFQTGKYPNGKMASLEGFAPIKAQYYANKTASAYSMTPTEWLVGIPLY
CCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHCCCCCCCCCCCCHHHEEECCEE
YNADTLGVRPDLIGSTKIDSWARLLDPAFKGHVALQEGVNVGLPDAAMALSALGEVSYVD
ECCCCCCCCCCCCCCCCHHHHHHHHCHHHCCCEEHHCCCCCCCCHHHHHHHHHHCCEECC
KGNMTRSEIDKTIKKLIEYKKAGQFRSFWLNFDQSVQLMASGEVVLQSMWSPAVTEVRTR
CCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCEEEEECHHHHHHHHCCHHHHHHHHC
GIACTFQPLKEGHRGWYIMMFQMQHLTGLKRECAIEYMNWYNSGWAGAFISRQGFYNTVP
CEEEEEHHHHCCCCCEEEEEEEEHHHHCCHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCC
ENVKPLMSANEYGYWYEGKPASEPILNPFGKVMEKPGAVRDGGSLWDRMGNIGIWNTLMD
HHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHC
EDRYLVRRWQDFIAA
CHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA