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The map label for this gene is oppC [H]

Identifier: 222094411

GI number: 222094411

Start: 723553

End: 724458

Strand: Reverse

Name: oppC [H]

Synonym: BCQ_0725

Alternate gene names: 222094411

Gene position: 724458-723553 (Counterclockwise)

Preceding gene: 222094412

Following gene: 222094410

Centisome position: 13.89

GC content: 34.66

Gene sequence:

>906_bases
ATGTTAGCAAACCCTGAAAAACAAACTGAAATTATTAATTTCGAAAAAAGCCCTTCTGGTTTCTCTATTATGTGGCGAGA
ACTTCGTAAAGATAAATTAGCAATGTTTTCACTTGTTTTCCTAGCAATCTTATTACTAGCAGTCTACGCAACATCTTTTA
TTATGAAACAAGAAGATATTGTACGAGTTGATTTATTCGCTATTTATGCTCCTCCCTCTGCTGAACATTGGTTAGGAACA
GATTATGGAGGACGCGATATTTTCGGCCAACTTATTATTGGTACGCGTAACTCATTTACAATTGGATTAGCGATTACTAT
TCTTTCTTGTTTAATTGGCCTTTCCATTGGATTAATTGCCGGTTATTTTGGAGGAGCAATTGATAATATCATTATGCGCA
TTATCGATTTTGTAATGGTTTTACCATTTTTAATGCTTGTAATTGTATTTATTACACTTGTTCCTACATTCAATATCTTC
ACTTTCATTTTAATTATGAGCGTGTTCTTATGGACAGGAAAGGCAAGATTAATTCGCTCAAAAGTATTAACTGAAAAAGA
ACTCGACTATGTCTCTGCATCAAAAACTTTAGGTACACCAAACTGGAAGATCATTCTTTTCCAAGTACTACCTAACTTAA
GTTCAATTATCATTGTTAGCGTTACATTAAACCTTGCTGGAAACATCGGTATTGAATCTGGTCTAACCTTCTTAGGGTTT
GGTCTACCAGAAAGTACACCAAGCCTTGGTACACTTGTTAGTTATGCTAGAAATCCAGATGTATTACAAGAAAAATGGTG
GATTTGGTTACCCGCATCAATCATGATTTTAACATTGATGCTGTGTATAAATTTTATTGGTCAAGCGCTACGTCGTTCGG
CCGATGCAAGACAAAGAAAAGGATAA

Upstream 100 bases:

>100_bases
TTACTGGATTTGCAACGTTACTTGGAACTCTCCTTTCAGATATTATTCTAAGCATCGTCGATCCACGTATTCGTATTGAT
TAAAGAAAGGAGATGACGTT

Downstream 100 bases:

>100_bases
GGGGTGGAAGAAATGACAAATAAGCCAAAGTTTTTCAAAGTATTAAGTACACTTGCGGTTTCAACATTACTACTTTCAGC
ATGTGGGGGCAGTGGGGGTA

Product: oligopeptide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MLANPEKQTEIINFEKSPSGFSIMWRELRKDKLAMFSLVFLAILLLAVYATSFIMKQEDIVRVDLFAIYAPPSAEHWLGT
DYGGRDIFGQLIIGTRNSFTIGLAITILSCLIGLSIGLIAGYFGGAIDNIIMRIIDFVMVLPFLMLVIVFITLVPTFNIF
TFILIMSVFLWTGKARLIRSKVLTEKELDYVSASKTLGTPNWKIILFQVLPNLSSIIIVSVTLNLAGNIGIESGLTFLGF
GLPESTPSLGTLVSYARNPDVLQEKWWIWLPASIMILTLMLCINFIGQALRRSADARQRKG

Sequences:

>Translated_301_residues
MLANPEKQTEIINFEKSPSGFSIMWRELRKDKLAMFSLVFLAILLLAVYATSFIMKQEDIVRVDLFAIYAPPSAEHWLGT
DYGGRDIFGQLIIGTRNSFTIGLAITILSCLIGLSIGLIAGYFGGAIDNIIMRIIDFVMVLPFLMLVIVFITLVPTFNIF
TFILIMSVFLWTGKARLIRSKVLTEKELDYVSASKTLGTPNWKIILFQVLPNLSSIIIVSVTLNLAGNIGIESGLTFLGF
GLPESTPSLGTLVSYARNPDVLQEKWWIWLPASIMILTLMLCINFIGQALRRSADARQRKG
>Mature_301_residues
MLANPEKQTEIINFEKSPSGFSIMWRELRKDKLAMFSLVFLAILLLAVYATSFIMKQEDIVRVDLFAIYAPPSAEHWLGT
DYGGRDIFGQLIIGTRNSFTIGLAITILSCLIGLSIGLIAGYFGGAIDNIIMRIIDFVMVLPFLMLVIVFITLVPTFNIF
TFILIMSVFLWTGKARLIRSKVLTEKELDYVSASKTLGTPNWKIILFQVLPNLSSIIIVSVTLNLAGNIGIESGLTFLGF
GLPESTPSLGTLVSYARNPDVLQEKWWIWLPASIMILTLMLCINFIGQALRRSADARQRKG

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=296, Percent_Identity=30.7432432432432, Blast_Score=137, Evalue=7e-34,
Organism=Escherichia coli, GI1787054, Length=273, Percent_Identity=28.9377289377289, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1788505, Length=229, Percent_Identity=33.1877729257642, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1789964, Length=243, Percent_Identity=34.156378600823, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1787498, Length=306, Percent_Identity=28.4313725490196, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1789889, Length=237, Percent_Identity=29.957805907173, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1787549, Length=290, Percent_Identity=26.8965517241379, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33550; Mature: 33550

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLANPEKQTEIINFEKSPSGFSIMWRELRKDKLAMFSLVFLAILLLAVYATSFIMKQEDI
CCCCCCCHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE
VRVDLFAIYAPPSAEHWLGTDYGGRDIFGQLIIGTRNSFTIGLAITILSCLIGLSIGLIA
EEEEEEEEECCCCCCCCCCCCCCCHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHH
GYFGGAIDNIIMRIIDFVMVLPFLMLVIVFITLVPTFNIFTFILIMSVFLWTGKARLIRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
KVLTEKELDYVSASKTLGTPNWKIILFQVLPNLSSIIIVSVTLNLAGNIGIESGLTFLGF
HHHHHHHHHHHHHHCCCCCCCHHEEHHHHHCCCCCEEEEEEEEECCCCCCHHCCCHHEEC
GLPESTPSLGTLVSYARNPDVLQEKWWIWLPASIMILTLMLCINFIGQALRRSADARQRK
CCCCCCCCHHHHHHHHCCCCHHHHCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
G
C
>Mature Secondary Structure
MLANPEKQTEIINFEKSPSGFSIMWRELRKDKLAMFSLVFLAILLLAVYATSFIMKQEDI
CCCCCCCHHHEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE
VRVDLFAIYAPPSAEHWLGTDYGGRDIFGQLIIGTRNSFTIGLAITILSCLIGLSIGLIA
EEEEEEEEECCCCCCCCCCCCCCCHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHH
GYFGGAIDNIIMRIIDFVMVLPFLMLVIVFITLVPTFNIFTFILIMSVFLWTGKARLIRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
KVLTEKELDYVSASKTLGTPNWKIILFQVLPNLSSIIIVSVTLNLAGNIGIESGLTFLGF
HHHHHHHHHHHHHHCCCCCCCHHEEHHHHHCCCCCEEEEEEEEECCCCCCHHCCCHHEEC
GLPESTPSLGTLVSYARNPDVLQEKWWIWLPASIMILTLMLCINFIGQALRRSADARQRK
CCCCCCCCHHHHHHHHCCCCHHHHCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8244921; 11337471 [H]