Click here to switch to the map view.

The map label for this gene is oppB [H]

Identifier: 222094412

GI number: 222094412

Start: 724476

End: 725441

Strand: Reverse

Name: oppB [H]

Synonym: BCQ_0726

Alternate gene names: 222094412

Gene position: 725441-724476 (Counterclockwise)

Preceding gene: 222094413

Following gene: 222094411

Centisome position: 13.91

GC content: 36.44

Gene sequence:

>966_bases
ATGTGGAAGTTTATATTACGGAGATTTTTAGTGATGATCCCGCAATTATTCGTGTTAAGTGTACTTGTCTTTCTACTAGC
TAAAGCAATGCCAGGTGATGCATTAACCGGCAAAGCAATAAATCCAAAAGCGGATCCAAAAGTAATTGAAGAACAACGTG
AAAAGCTTGGATTAAATGACCCAGTTACAACACAATATGTTCGCTGGATTAAAAATGCAGTACAAGGTGACTTTGGTATC
TCCTATGCACATAAAATGAAAGTAACCGAGTTAATTGGAGAACGACTTGGAAATACAGTATCTTTAGCACTTGTTATTCT
TATTCTTACTTATTTAATTGCCATACCACTGGGAGTTATAAGTGGGCGGTGGAATGATACCTGGGCTGATCGACTCATTA
CCATTTACAACTATCTAGGTTTTGCTACACCACTATTTATATTTGCACTCGTTATGCTCTTCCTATTCGGATTTAAGTTT
GCAATATTCCCAACCGGCGGTAGCGTAGATCCTCAAGTTGCAACAGGTACATTTGCTTACTATTTAAGCAAATTGAATCA
CATGCTACTACCAGCTTTATCAGGGGCATTAATTGCAACAGTTGGTACTGTTCAATATTTACGAAGCGAAATTATTGATA
CGAAACATAAAGATTTTGTGCGTACAGTAAGAGCAAAAGGTGTTCCAGAATCAAAAATCTATTCTAGACATATTTTACGA
AATTCATTCTTACCAATTGCAGCCTTCTTAGGCTATGAAATTACGGGATTAGTTGGCGGTGCCATCTTTTTAGAAAGTAT
TTTTAGCTATCCAGGAATTGGCCAACTATTTATACAATCTATCTCTCAACGTGATTTTAGTGTAATAACTGCACTCGTTA
TGTTTACTGGATTTGCAACGTTACTTGGAACTCTCCTTTCAGATATTATTCTAAGCATCGTCGATCCACGTATTCGTATT
GATTAA

Upstream 100 bases:

>100_bases
AATCATACGAAAATTATTTCAATGAAAACGGTCGGGCTTATGATTTAAAACCAATCTCGCCAACGCACCGGGTGGCATTA
CCATAAGGGAGTGATAAAAC

Downstream 100 bases:

>100_bases
AGAAAGGAGATGACGTTATGTTAGCAAACCCTGAAAAACAAACTGAAATTATTAATTTCGAAAAAAGCCCTTCTGGTTTC
TCTATTATGTGGCGAGAACT

Product: oligopeptide ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MWKFILRRFLVMIPQLFVLSVLVFLLAKAMPGDALTGKAINPKADPKVIEEQREKLGLNDPVTTQYVRWIKNAVQGDFGI
SYAHKMKVTELIGERLGNTVSLALVILILTYLIAIPLGVISGRWNDTWADRLITIYNYLGFATPLFIFALVMLFLFGFKF
AIFPTGGSVDPQVATGTFAYYLSKLNHMLLPALSGALIATVGTVQYLRSEIIDTKHKDFVRTVRAKGVPESKIYSRHILR
NSFLPIAAFLGYEITGLVGGAIFLESIFSYPGIGQLFIQSISQRDFSVITALVMFTGFATLLGTLLSDIILSIVDPRIRI
D

Sequences:

>Translated_321_residues
MWKFILRRFLVMIPQLFVLSVLVFLLAKAMPGDALTGKAINPKADPKVIEEQREKLGLNDPVTTQYVRWIKNAVQGDFGI
SYAHKMKVTELIGERLGNTVSLALVILILTYLIAIPLGVISGRWNDTWADRLITIYNYLGFATPLFIFALVMLFLFGFKF
AIFPTGGSVDPQVATGTFAYYLSKLNHMLLPALSGALIATVGTVQYLRSEIIDTKHKDFVRTVRAKGVPESKIYSRHILR
NSFLPIAAFLGYEITGLVGGAIFLESIFSYPGIGQLFIQSISQRDFSVITALVMFTGFATLLGTLLSDIILSIVDPRIRI
D
>Mature_321_residues
MWKFILRRFLVMIPQLFVLSVLVFLLAKAMPGDALTGKAINPKADPKVIEEQREKLGLNDPVTTQYVRWIKNAVQGDFGI
SYAHKMKVTELIGERLGNTVSLALVILILTYLIAIPLGVISGRWNDTWADRLITIYNYLGFATPLFIFALVMLFLFGFKF
AIFPTGGSVDPQVATGTFAYYLSKLNHMLLPALSGALIATVGTVQYLRSEIIDTKHKDFVRTVRAKGVPESKIYSRHILR
NSFLPIAAFLGYEITGLVGGAIFLESIFSYPGIGQLFIQSISQRDFSVITALVMFTGFATLLGTLLSDIILSIVDPRIRI
D

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=320, Percent_Identity=32.8125, Blast_Score=198, Evalue=5e-52,
Organism=Escherichia coli, GI1787497, Length=322, Percent_Identity=32.2981366459627, Blast_Score=178, Evalue=5e-46,
Organism=Escherichia coli, GI1789888, Length=321, Percent_Identity=30.2180685358255, Blast_Score=164, Evalue=6e-42,
Organism=Escherichia coli, GI1789965, Length=336, Percent_Identity=28.2738095238095, Blast_Score=163, Evalue=2e-41,
Organism=Escherichia coli, GI1787761, Length=332, Percent_Identity=29.5180722891566, Blast_Score=144, Evalue=1e-35,
Organism=Escherichia coli, GI1788504, Length=366, Percent_Identity=26.775956284153, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1787550, Length=268, Percent_Identity=25.7462686567164, Blast_Score=123, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35675; Mature: 35675

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWKFILRRFLVMIPQLFVLSVLVFLLAKAMPGDALTGKAINPKADPKVIEEQREKLGLND
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
PVTTQYVRWIKNAVQGDFGISYAHKMKVTELIGERLGNTVSLALVILILTYLIAIPLGVI
CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
SGRWNDTWADRLITIYNYLGFATPLFIFALVMLFLFGFKFAIFPTGGSVDPQVATGTFAY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHH
YLSKLNHMLLPALSGALIATVGTVQYLRSEIIDTKHKDFVRTVRAKGVPESKIYSRHILR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHH
NSFLPIAAFLGYEITGLVGGAIFLESIFSYPGIGQLFIQSISQRDFSVITALVMFTGFAT
HCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLGTLLSDIILSIVDPRIRID
HHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MWKFILRRFLVMIPQLFVLSVLVFLLAKAMPGDALTGKAINPKADPKVIEEQREKLGLND
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
PVTTQYVRWIKNAVQGDFGISYAHKMKVTELIGERLGNTVSLALVILILTYLIAIPLGVI
CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
SGRWNDTWADRLITIYNYLGFATPLFIFALVMLFLFGFKFAIFPTGGSVDPQVATGTFAY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHH
YLSKLNHMLLPALSGALIATVGTVQYLRSEIIDTKHKDFVRTVRAKGVPESKIYSRHILR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHH
NSFLPIAAFLGYEITGLVGGAIFLESIFSYPGIGQLFIQSISQRDFSVITALVMFTGFAT
HCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLGTLLSDIILSIVDPRIRID
HHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8244921; 11337471 [H]