| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
Click here to switch to the map view.
The map label for this gene is 221636219
Identifier: 221636219
GI number: 221636219
Start: 799524
End: 800666
Strand: Reverse
Name: 221636219
Synonym: trd_A0813
Alternate gene names: NA
Gene position: 800666-799524 (Counterclockwise)
Preceding gene: 221636220
Following gene: 221636217
Centisome position: 87.24
GC content: 60.63
Gene sequence:
>1143_bases ATGAGTGGGGCGACGACGAAACGACCGGGAAACGACTCGCTCGGTCCCGATTTGGAAGGGCGCTTGGGAGCGTTCACGCT TTCCGATCTTCTCCAGATGATCGGGTACACGCACAAGACAGGAACACTGACACTGATCCAAGGCTGGAACACGCGCACGA TCACCTTCGAGCGGGGGCGTATCACCTATGTGGCCGCTGGGTCGCGCTTGCCGACCTTGATCGAGCTCCTCGTTCGGGCG GGACGGCTGAGCGGTCGGGAGCTGGAGCAGTTGCAAGCAGAGCACCCGGACGAGGAAAGCCTCCTGACGCACCTGCTCGA GCGAGGGCGGATCGTCCCGGAGGATATCGAACGCTGTCGCGAGCAGCAGCTGGAAGTTGCGATCTATACCCTGTTCTTGT GGCGGAACTGTCGGTTCACTTTCCGCGCCGGAGAATGCCTGTACGAGGACGGCATCCCCGTGAGCGTCGACAGCTTGCAA CTAGTCCTGGAGGGAACACGTCGAGTCGACGAGTGGATCCAGTTCAGCCCGGTCATCCCCTCGGTCTCGGTGATTTTTCG GCGTCGCAAGGTGGAGCGGCCGATCCCGCCGGAACTCGACACAATTTACCAGCAGGTAGATGGGCAGCGGGACGTGGCGA CGATCGCCCGCGAGGTGGGTTGGACCCAGTTCGAGACAGCGCGGGCGCTGTACCGTTTGTACCGACTGGGTCTGGTCGAG GCGGTGCCGCCGAACCGGGTGAAGATCATCGAGCTGTTCACGCTGGCTGTCGAGTCGATCTATCTGAAGCTTGTCCTTTT CGATTATCCGCGTGTGGCGCTCGAGTTCGAGCAGCAACTCAACCGCTTCGCCCAGCAGCATGGGCTGCGGGTACGGATGG CCAGTGGACGCGTGATCAAGACCGACCGCGAGACTCCGCTGAGTTCCACTGAACTGATCGATCTCTACAAGCTGTTCATC GCTATCCAGAACAACAAGTTCCATAAGCTGTTCGACCCGGTCGTTGCAAATGGGCTCATGGAGGGACTCTACCGCCACGC CGATCCTGAGTTGCAGCAGATGTTGCGCATGTACGAGTTCTACGAGATCGAGGGGCTGTTTCCGCGACGACCGACGAAGG CCTCCACGTCCTCATCGGGGTGA
Upstream 100 bases:
>100_bases AGACGCCGTGGCCGTTACCAGGCCCACCGCTCCGACTCGAAGTCCGTGCTGTCGATCGAGCAGGCAACGAGGGCCGGGCA GCAGTGGAACTCGTGCGACC
Downstream 100 bases:
>100_bases GGCAGCAGGGTCAGCCAGGACTGCGGCGTGCGGTCGATCGCCCCTCGCTGGTCTGGTGGCCTCGCGGGATTCAGGTCGTG CGACCGGAATACCGAGCCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 380; Mature: 379
Protein sequence:
>380_residues MSGATTKRPGNDSLGPDLEGRLGAFTLSDLLQMIGYTHKTGTLTLIQGWNTRTITFERGRITYVAAGSRLPTLIELLVRA GRLSGRELEQLQAEHPDEESLLTHLLERGRIVPEDIERCREQQLEVAIYTLFLWRNCRFTFRAGECLYEDGIPVSVDSLQ LVLEGTRRVDEWIQFSPVIPSVSVIFRRRKVERPIPPELDTIYQQVDGQRDVATIAREVGWTQFETARALYRLYRLGLVE AVPPNRVKIIELFTLAVESIYLKLVLFDYPRVALEFEQQLNRFAQQHGLRVRMASGRVIKTDRETPLSSTELIDLYKLFI AIQNNKFHKLFDPVVANGLMEGLYRHADPELQQMLRMYEFYEIEGLFPRRPTKASTSSSG
Sequences:
>Translated_380_residues MSGATTKRPGNDSLGPDLEGRLGAFTLSDLLQMIGYTHKTGTLTLIQGWNTRTITFERGRITYVAAGSRLPTLIELLVRA GRLSGRELEQLQAEHPDEESLLTHLLERGRIVPEDIERCREQQLEVAIYTLFLWRNCRFTFRAGECLYEDGIPVSVDSLQ LVLEGTRRVDEWIQFSPVIPSVSVIFRRRKVERPIPPELDTIYQQVDGQRDVATIAREVGWTQFETARALYRLYRLGLVE AVPPNRVKIIELFTLAVESIYLKLVLFDYPRVALEFEQQLNRFAQQHGLRVRMASGRVIKTDRETPLSSTELIDLYKLFI AIQNNKFHKLFDPVVANGLMEGLYRHADPELQQMLRMYEFYEIEGLFPRRPTKASTSSSG >Mature_379_residues SGATTKRPGNDSLGPDLEGRLGAFTLSDLLQMIGYTHKTGTLTLIQGWNTRTITFERGRITYVAAGSRLPTLIELLVRAG RLSGRELEQLQAEHPDEESLLTHLLERGRIVPEDIERCREQQLEVAIYTLFLWRNCRFTFRAGECLYEDGIPVSVDSLQL VLEGTRRVDEWIQFSPVIPSVSVIFRRRKVERPIPPELDTIYQQVDGQRDVATIAREVGWTQFETARALYRLYRLGLVEA VPPNRVKIIELFTLAVESIYLKLVLFDYPRVALEFEQQLNRFAQQHGLRVRMASGRVIKTDRETPLSSTELIDLYKLFIA IQNNKFHKLFDPVVANGLMEGLYRHADPELQQMLRMYEFYEIEGLFPRRPTKASTSSSG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43646; Mature: 43515
Theoretical pI: Translated: 7.13; Mature: 7.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGATTKRPGNDSLGPDLEGRLGAFTLSDLLQMIGYTHKTGTLTLIQGWNTRTITFERGR CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCE ITYVAAGSRLPTLIELLVRAGRLSGRELEQLQAEHPDEESLLTHLLERGRIVPEDIERCR EEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHH EQQLEVAIYTLFLWRNCRFTFRAGECLYEDGIPVSVDSLQLVLEGTRRVDEWIQFSPVIP HHHHHHHHHHHHHHHCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC SVSVIFRRRKVERPIPPELDTIYQQVDGQRDVATIAREVGWTQFETARALYRLYRLGLVE HHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC AVPPNRVKIIELFTLAVESIYLKLVLFDYPRVALEFEQQLNRFAQQHGLRVRMASGRVIK CCCCCCEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEECCCCEEE TDRETPLSSTELIDLYKLFIAIQNNKFHKLFDPVVANGLMEGLYRHADPELQQMLRMYEF CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH YEIEGLFPRRPTKASTSSSG HHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure SGATTKRPGNDSLGPDLEGRLGAFTLSDLLQMIGYTHKTGTLTLIQGWNTRTITFERGR CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCE ITYVAAGSRLPTLIELLVRAGRLSGRELEQLQAEHPDEESLLTHLLERGRIVPEDIERCR EEEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHH EQQLEVAIYTLFLWRNCRFTFRAGECLYEDGIPVSVDSLQLVLEGTRRVDEWIQFSPVIP HHHHHHHHHHHHHHHCCEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC SVSVIFRRRKVERPIPPELDTIYQQVDGQRDVATIAREVGWTQFETARALYRLYRLGLVE HHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC AVPPNRVKIIELFTLAVESIYLKLVLFDYPRVALEFEQQLNRFAQQHGLRVRMASGRVIK CCCCCCEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEECCCCEEE TDRETPLSSTELIDLYKLFIAIQNNKFHKLFDPVVANGLMEGLYRHADPELQQMLRMYEF CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH YEIEGLFPRRPTKASTSSSG HHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA