Click here to switch to the map view.

The map label for this gene is 221636217

Identifier: 221636217

GI number: 221636217

Start: 796591

End: 798027

Strand: Reverse

Name: 221636217

Synonym: trd_A0811

Alternate gene names: NA

Gene position: 798027-796591 (Counterclockwise)

Preceding gene: 221636219

Following gene: 221636215

Centisome position: 86.96

GC content: 65.07

Gene sequence:

>1437_bases
ATGGCAGTCGACCGGAGAGGAGTGAACGCGCCCAACGGGCGACCCGACTTCCGTCAGCCTGGCGCGATTCTGCTGCTTTC
CTGTTACGAACTCGGTCACCAGCCGCTGAGCGTAGCGCTCCCGCTGGCCACGCTGCGTGCAGCGGGGTATCAGCCCGTCG
CTGTGGACACCGCGGTCCAGCGTCTCGACGACGAAACGATCGCGCGAGCGCGGGCGATCGCGATCTCTGTCCCGATGCAT
ACGGCCTTGCGCTTGGGGGTCGCCCTCGGCCAGCGAATCCGCGCGGTCGCTCCGGCGGCGCATCTCTGTTATTACGGTCT
CTACGCCTGGCTCAATCGTGATTATCTCTTGCGACACATCGCCGACAGTGTGATCGGTGGTGAGATCGAGCTGCCGCTCC
TCGGACTGGTCCAAGCCCTGGAACGCGGTACGAGCGTCGACGTGCCGGGTGTGGTCACGCGCGAGCGACCGGCGGGGCCG
GCTCTGATACGGTTCGAGTACCCGGTGCCAGCCCGTGATTCACTGCCGGGGCTGCGGCACTATGCGCATCTCGTGGCCGG
AGAACGGGTGGTGCCTGCCGGTTACACGGAGACGACACGCGGCTGTCACCATACGTGCGCCCATTGTCCGGTGGTCCCGG
TCTATCGGGGCCGCTTCTTCGCGATTCCGCGATCGGTGGTGCTCGCGGACATCCGTCAGCAGGTCGCGCACGGCGCACGG
CACATCACGTTCGGGGATCCGGACTTCCTCAATGGGCCGACGCACAGTCTGCGCATTTGCCGAGCACTTCACGAGGAGTT
CCCCGACGTCACGTTCGACTTCACCGCGCGAATCGAGCACATCGTCCGGCATCGAGACCTGATGTCCGAGTTCAGGCGAC
TCGGTTGTCTCTTCGTCGTGTCGGCGGTGGAGCTTTTGAGCGAGCCTGCCTTGCAGGCGATCAGAAAGGGTCACACCCGA
GCGGACGTGATCGAGGCCTTGCGGATCTGCGATGCCGCAGGTATCGCGCTCCGTCCGTCGCTCCTTCCGTTCACCCCGTG
GACGACCCTGGACGACTACCTCGACCTTCTGCAGTTCATCGAGGACGAGGAGTTGATCGAGCATGTCGATGCGGTCCATC
TCTCCATCCGGCTCTTGATTCCTCCCGGCTCGGCCTTGCTCGAGCAGCCTGACGTGCTCCCGTATCTCGGCCCGCTGGAC
GAAGCGAACTTCACCTATACCTGGCGTCATCCGGATCAGCGGATGGATGCGCTCCAGCGACGCGTCGCTGCAGTCGTGGA
ACAGGCGACGCGGGAAGGCTGGGATCCCTACGAGATGTTCGCGGTCGTCCGGGCCGCAGCCTATGAGGCCGCCGGTCGGA
GAGCCCCGAGTACGCCACCGAAGCGACGGACCAAGCGACCGGAGCCACCGCGGCTCACCGAATCGTGGTTCTGTTGA

Upstream 100 bases:

>100_bases
CGCTCCGAGCAACCGGCGCAGGGCCAGCGGGTGGGTGAGCCGGGGACCGGCGAGCAGGTGGGCGACATGTTACGCTTACC
GGAGGGTTGCGGAGGTCAGC

Downstream 100 bases:

>100_bases
GCGGAGCCGCTCGAGGACCCGTCGGGTCCCGTCGCGAGCCAGGTGAGGATGGTGGATCAGCCACTTCGGTGATCGCGCAC
GAGGGAGGCGTCGACGGCGC

Product: radical SAM domain protein

Products: NA

Alternate protein names: Radical SAM Domain-Containing Protein; Radical SAM Family Protein; Cobalamin

Number of amino acids: Translated: 478; Mature: 477

Protein sequence:

>478_residues
MAVDRRGVNAPNGRPDFRQPGAILLLSCYELGHQPLSVALPLATLRAAGYQPVAVDTAVQRLDDETIARARAIAISVPMH
TALRLGVALGQRIRAVAPAAHLCYYGLYAWLNRDYLLRHIADSVIGGEIELPLLGLVQALERGTSVDVPGVVTRERPAGP
ALIRFEYPVPARDSLPGLRHYAHLVAGERVVPAGYTETTRGCHHTCAHCPVVPVYRGRFFAIPRSVVLADIRQQVAHGAR
HITFGDPDFLNGPTHSLRICRALHEEFPDVTFDFTARIEHIVRHRDLMSEFRRLGCLFVVSAVELLSEPALQAIRKGHTR
ADVIEALRICDAAGIALRPSLLPFTPWTTLDDYLDLLQFIEDEELIEHVDAVHLSIRLLIPPGSALLEQPDVLPYLGPLD
EANFTYTWRHPDQRMDALQRRVAAVVEQATREGWDPYEMFAVVRAAAYEAAGRRAPSTPPKRRTKRPEPPRLTESWFC

Sequences:

>Translated_478_residues
MAVDRRGVNAPNGRPDFRQPGAILLLSCYELGHQPLSVALPLATLRAAGYQPVAVDTAVQRLDDETIARARAIAISVPMH
TALRLGVALGQRIRAVAPAAHLCYYGLYAWLNRDYLLRHIADSVIGGEIELPLLGLVQALERGTSVDVPGVVTRERPAGP
ALIRFEYPVPARDSLPGLRHYAHLVAGERVVPAGYTETTRGCHHTCAHCPVVPVYRGRFFAIPRSVVLADIRQQVAHGAR
HITFGDPDFLNGPTHSLRICRALHEEFPDVTFDFTARIEHIVRHRDLMSEFRRLGCLFVVSAVELLSEPALQAIRKGHTR
ADVIEALRICDAAGIALRPSLLPFTPWTTLDDYLDLLQFIEDEELIEHVDAVHLSIRLLIPPGSALLEQPDVLPYLGPLD
EANFTYTWRHPDQRMDALQRRVAAVVEQATREGWDPYEMFAVVRAAAYEAAGRRAPSTPPKRRTKRPEPPRLTESWFC
>Mature_477_residues
AVDRRGVNAPNGRPDFRQPGAILLLSCYELGHQPLSVALPLATLRAAGYQPVAVDTAVQRLDDETIARARAIAISVPMHT
ALRLGVALGQRIRAVAPAAHLCYYGLYAWLNRDYLLRHIADSVIGGEIELPLLGLVQALERGTSVDVPGVVTRERPAGPA
LIRFEYPVPARDSLPGLRHYAHLVAGERVVPAGYTETTRGCHHTCAHCPVVPVYRGRFFAIPRSVVLADIRQQVAHGARH
ITFGDPDFLNGPTHSLRICRALHEEFPDVTFDFTARIEHIVRHRDLMSEFRRLGCLFVVSAVELLSEPALQAIRKGHTRA
DVIEALRICDAAGIALRPSLLPFTPWTTLDDYLDLLQFIEDEELIEHVDAVHLSIRLLIPPGSALLEQPDVLPYLGPLDE
ANFTYTWRHPDQRMDALQRRVAAVVEQATREGWDPYEMFAVVRAAAYEAAGRRAPSTPPKRRTKRPEPPRLTESWFC

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53229; Mature: 53098

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVDRRGVNAPNGRPDFRQPGAILLLSCYELGHQPLSVALPLATLRAAGYQPVAVDTAVQ
CCCCCCCCCCCCCCCCCCCCCHHEEHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHH
RLDDETIARARAIAISVPMHTALRLGVALGQRIRAVAPAAHLCYYGLYAWLNRDYLLRHI
HHCHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADSVIGGEIELPLLGLVQALERGTSVDVPGVVTRERPAGPALIRFEYPVPARDSLPGLRH
HHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCEECCCCCCCEEEEEECCCCCCCCCCHHHH
YAHLVAGERVVPAGYTETTRGCHHTCAHCPVVPVYRGRFFAIPRSVVLADIRQQVAHGAR
HHHHHHCCEECCCCCCHHCCCHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCC
HITFGDPDFLNGPTHSLRICRALHEEFPDVTFDFTARIEHIVRHRDLMSEFRRLGCLFVV
EEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAVELLSEPALQAIRKGHTRADVIEALRICDAAGIALRPSLLPFTPWTTLDDYLDLLQFI
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHH
EDEELIEHVDAVHLSIRLLIPPGSALLEQPDVLPYLGPLDEANFTYTWRHPDQRMDALQR
CHHHHHHHHHHHEEEEEEEECCCHHHHCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHH
RVAAVVEQATREGWDPYEMFAVVRAAAYEAAGRRAPSTPPKRRTKRPEPPRLTESWFC
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AVDRRGVNAPNGRPDFRQPGAILLLSCYELGHQPLSVALPLATLRAAGYQPVAVDTAVQ
CCCCCCCCCCCCCCCCCCCCHHEEHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHH
RLDDETIARARAIAISVPMHTALRLGVALGQRIRAVAPAAHLCYYGLYAWLNRDYLLRHI
HHCHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ADSVIGGEIELPLLGLVQALERGTSVDVPGVVTRERPAGPALIRFEYPVPARDSLPGLRH
HHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCEECCCCCCCEEEEEECCCCCCCCCCHHHH
YAHLVAGERVVPAGYTETTRGCHHTCAHCPVVPVYRGRFFAIPRSVVLADIRQQVAHGAR
HHHHHHCCEECCCCCCHHCCCHHHHHHCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCC
HITFGDPDFLNGPTHSLRICRALHEEFPDVTFDFTARIEHIVRHRDLMSEFRRLGCLFVV
EEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAVELLSEPALQAIRKGHTRADVIEALRICDAAGIALRPSLLPFTPWTTLDDYLDLLQFI
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHH
EDEELIEHVDAVHLSIRLLIPPGSALLEQPDVLPYLGPLDEANFTYTWRHPDQRMDALQR
CHHHHHHHHHHHEEEEEEEECCCHHHHCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHH
RVAAVVEQATREGWDPYEMFAVVRAAAYEAAGRRAPSTPPKRRTKRPEPPRLTESWFC
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA