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The map label for this gene is rbsC [H]

Identifier: 221635994

GI number: 221635994

Start: 579208

End: 579753

Strand: Reverse

Name: rbsC [H]

Synonym: trd_A0588

Alternate gene names: 221635994

Gene position: 579753-579208 (Counterclockwise)

Preceding gene: 221635995

Following gene: 221635993

Centisome position: 63.17

GC content: 62.45

Gene sequence:

>546_bases
GTGACCGTGCCGTATGACTACCGGGCGTTCATCTGGCTCGGGCAAGGCTATGTGTGGATCGTCCCGGTGCCGGTCATCAT
CATGATCGTTCTGACGATTCTGGGGACGATCTTTCTCGGCTTCACGACTTACGGCCGCTACATTTATGCGGTTGGGGGAA
ATTCGGAAGCGGCCCGCTTGGCCGGTATTCCGGTCGAGCGCGTGAAGTTGCTGGTCTATGTCTTGTGCTCGACGTTGGCT
GCGCTGGCTGGGCTGATCCTTGTCGCGCGGCTCGTCTCAGCGCAGCCTTCCGCTGGGCTCGGTTTCGAGCTCCCCGTGAT
CGCCGCCTCGATCATCGGTGGCACGAGTCTCATGGGCGGTGAGGGTACGGTGCTAGGCGCTGTTCTCGGTGCGGCCATCA
TGGGAGTGCTGGAAAACGGCATGGTTCTGCTCGGCGTGAGTACCTATGCGCAGCAGGCCGTGACTGGTACCGTGATCATC
CTTGCGGTGGCGCTGGACATCATGCAGAAGCGGCGGCGGATGCGAGTGCGACGGGCCCGCCGCTGA

Upstream 100 bases:

>100_bases
ACTGCTCATTACCCGAGTCGGTCTGCCTCCCTTCATCGCGACGCTCGGGACGTTGAGCATCGGGCGCGGGCTCGTCTATG
TGCTCACCTAAGGGTATCCG

Downstream 100 bases:

>100_bases
GTCGAAACGGGGGAGGGTCGGGTGGAGCGGACACGAGCGTTTCTCGAGCGGCTGGGCTTGCCACGGGGTGATCTCCATGA
TCTGCCGACCAGCACCAAGC

Product: ribose transport system permease protein RbsC

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MTVPYDYRAFIWLGQGYVWIVPVPVIIMIVLTILGTIFLGFTTYGRYIYAVGGNSEAARLAGIPVERVKLLVYVLCSTLA
ALAGLILVARLVSAQPSAGLGFELPVIAASIIGGTSLMGGEGTVLGAVLGAAIMGVLENGMVLLGVSTYAQQAVTGTVII
LAVALDIMQKRRRMRVRRARR

Sequences:

>Translated_181_residues
MTVPYDYRAFIWLGQGYVWIVPVPVIIMIVLTILGTIFLGFTTYGRYIYAVGGNSEAARLAGIPVERVKLLVYVLCSTLA
ALAGLILVARLVSAQPSAGLGFELPVIAASIIGGTSLMGGEGTVLGAVLGAAIMGVLENGMVLLGVSTYAQQAVTGTVII
LAVALDIMQKRRRMRVRRARR
>Mature_180_residues
TVPYDYRAFIWLGQGYVWIVPVPVIIMIVLTILGTIFLGFTTYGRYIYAVGGNSEAARLAGIPVERVKLLVYVLCSTLAA
LAGLILVARLVSAQPSAGLGFELPVIAASIIGGTSLMGGEGTVLGAVLGAAIMGVLENGMVLLGVSTYAQQAVTGTVIIL
AVALDIMQKRRRMRVRRARR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=161, Percent_Identity=52.1739130434783, Blast_Score=152, Evalue=2e-38,
Organism=Escherichia coli, GI1788896, Length=179, Percent_Identity=41.8994413407821, Blast_Score=132, Evalue=1e-32,
Organism=Escherichia coli, GI1789992, Length=131, Percent_Identity=54.9618320610687, Blast_Score=130, Evalue=5e-32,
Organism=Escherichia coli, GI145693152, Length=169, Percent_Identity=41.4201183431953, Blast_Score=126, Evalue=6e-31,
Organism=Escherichia coli, GI1790524, Length=150, Percent_Identity=44.6666666666667, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1787794, Length=162, Percent_Identity=28.3950617283951, Blast_Score=80, Evalue=9e-17,
Organism=Escherichia coli, GI87082395, Length=161, Percent_Identity=31.6770186335404, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788471, Length=132, Percent_Identity=40.1515151515151, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI145693214, Length=151, Percent_Identity=37.7483443708609, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787793, Length=192, Percent_Identity=29.1666666666667, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 19196; Mature: 19065

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVPYDYRAFIWLGQGYVWIVPVPVIIMIVLTILGTIFLGFTTYGRYIYAVGGNSEAARL
CCCCCCCEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHH
AGIPVERVKLLVYVLCSTLAALAGLILVARLVSAQPSAGLGFELPVIAASIIGGTSLMGG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCC
EGTVLGAVLGAAIMGVLENGMVLLGVSTYAQQAVTGTVIILAVALDIMQKRRRMRVRRAR
CCHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
R
C
>Mature Secondary Structure 
TVPYDYRAFIWLGQGYVWIVPVPVIIMIVLTILGTIFLGFTTYGRYIYAVGGNSEAARL
CCCCCCEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCHHH
AGIPVERVKLLVYVLCSTLAALAGLILVARLVSAQPSAGLGFELPVIAASIIGGTSLMGG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCC
EGTVLGAVLGAAIMGVLENGMVLLGVSTYAQQAVTGTVIILAVALDIMQKRRRMRVRRAR
CCHHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]