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The map label for this gene is rbsC [H]

Identifier: 221635995

GI number: 221635995

Start: 579763

End: 580197

Strand: Reverse

Name: rbsC [H]

Synonym: trd_A0589

Alternate gene names: 221635995

Gene position: 580197-579763 (Counterclockwise)

Preceding gene: 221635996

Following gene: 221635994

Centisome position: 63.22

GC content: 62.53

Gene sequence:

>435_bases
ATGACCGGTGCAGCCGGGCGGCGGCTCCTGCAGCGGCTCACCAGTTTCCGGGAGTTCAACATCCTGGTCGCGCTGCTGGT
GCTCGGTCTCTTTCTCTCGATCACGACCGATGCCTTCTTGACCACTGGCAACTTGTTCGGTTTGGCACGAGCTTTCTCGC
TGACGGCCATCGTGGCGATCGGCCAGACAATGGTCATCCTGACGGGTGGGATCGACCTTTCGGTCGGCTCAGTACTCGCA
CTGGCTGGTCTTTCGACCGGGATGCTCCTGGAGCGTGGGGTTCCATTGCCGCTGGCGATGCTGGCTGGTCTCGGTGTCGG
GGCCATGGTGGGACTGGTCAACGGACTGCTCATTACCCGAGTCGGTCTGCCTCCCTTCATCGCGACGCTCGGGACGTTGA
GCATCGGGCGCGGGCTCGTCTATGTGCTCACCTAA

Upstream 100 bases:

>100_bases
GGTCGGGAGGAGCTGTGACGAGATCGACAGTCGTTCGCCGCAGCAGGAGCGGATCCTAAGCGAATCGATTCCGGTGACGG
AGCGCCGTACGGATCAGGCA

Downstream 100 bases:

>100_bases
GGGTATCCGGTGACCGTGCCGTATGACTACCGGGCGTTCATCTGGCTCGGGCAAGGCTATGTGTGGATCGTCCCGGTGCC
GGTCATCATCATGATCGTTC

Product: ABC transporter, carbohydrate uptake transporter-2 (CUT2) family, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 144; Mature: 143

Protein sequence:

>144_residues
MTGAAGRRLLQRLTSFREFNILVALLVLGLFLSITTDAFLTTGNLFGLARAFSLTAIVAIGQTMVILTGGIDLSVGSVLA
LAGLSTGMLLERGVPLPLAMLAGLGVGAMVGLVNGLLITRVGLPPFIATLGTLSIGRGLVYVLT

Sequences:

>Translated_144_residues
MTGAAGRRLLQRLTSFREFNILVALLVLGLFLSITTDAFLTTGNLFGLARAFSLTAIVAIGQTMVILTGGIDLSVGSVLA
LAGLSTGMLLERGVPLPLAMLAGLGVGAMVGLVNGLLITRVGLPPFIATLGTLSIGRGLVYVLT
>Mature_143_residues
TGAAGRRLLQRLTSFREFNILVALLVLGLFLSITTDAFLTTGNLFGLARAFSLTAIVAIGQTMVILTGGIDLSVGSVLAL
AGLSTGMLLERGVPLPLAMLAGLGVGAMVGLVNGLLITRVGLPPFIATLGTLSIGRGLVYVLT

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693214, Length=110, Percent_Identity=45.4545454545455, Blast_Score=76, Evalue=8e-16,
Organism=Escherichia coli, GI1790524, Length=120, Percent_Identity=41.6666666666667, Blast_Score=74, Evalue=3e-15,
Organism=Escherichia coli, GI1790191, Length=140, Percent_Identity=40, Blast_Score=63, Evalue=7e-12,
Organism=Escherichia coli, GI1787793, Length=88, Percent_Identity=42.0454545454545, Blast_Score=62, Evalue=1e-11,
Organism=Escherichia coli, GI145693152, Length=129, Percent_Identity=35.6589147286822, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 14739; Mature: 14608

Theoretical pI: Translated: 12.03; Mature: 12.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGAAGRRLLQRLTSFREFNILVALLVLGLFLSITTDAFLTTGNLFGLARAFSLTAIVAI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
GQTMVILTGGIDLSVGSVLALAGLSTGMLLERGVPLPLAMLAGLGVGAMVGLVNGLLITR
CCEEEEEECCCCCCHHHHHHHHHCCCCHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHH
VGLPPFIATLGTLSIGRGLVYVLT
CCCCHHHHHHHHHHHCCCEEEEEC
>Mature Secondary Structure 
TGAAGRRLLQRLTSFREFNILVALLVLGLFLSITTDAFLTTGNLFGLARAFSLTAIVAI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
GQTMVILTGGIDLSVGSVLALAGLSTGMLLERGVPLPLAMLAGLGVGAMVGLVNGLLITR
CCEEEEEECCCCCCHHHHHHHHHCCCCHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHH
VGLPPFIATLGTLSIGRGLVYVLT
CCCCHHHHHHHHHHHCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]