| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is 221635787
Identifier: 221635787
GI number: 221635787
Start: 366684
End: 367235
Strand: Reverse
Name: 221635787
Synonym: trd_A0381
Alternate gene names: NA
Gene position: 367235-366684 (Counterclockwise)
Preceding gene: 221635791
Following gene: 221635786
Centisome position: 40.02
GC content: 63.22
Gene sequence:
>552_bases ATGTCGCTCGACTCGCCGCGCGACCGCCTGTCGACCCTCGCGCGCGGACTGGAAGGGCTGGCCACCCTAGCAGGACTCGC GCTGACCACGCTGGCCTGCTGTAACTGGCTGGTGATTCAATGGCTCGCTCTCCTGCTTTCCGCACTCGGTGGGACTGCTG CCTTCACCTTCTTGGTACGTCTGGAGACACCCCTTCTCGCCGCTGTCATGGTCATTCTTCTTATCGCCAGCCTGCTGGCG CGTGACACCTTCTCCCGCATCCTCGATCTCATACTGGCTGCACTGGTCCTCGTGCTCGCTGTTCTCCTCTTGGCGTGGGA ACAGGATCCTGCGATCTTGTGGAGCCTCCCCTTGCTCGGCTGGCTCTTTGTCCATCGCCAGCAGACGCTCTTCGTCGCTT TTGCTGGCGCTGCCGGACTCCGCGTTATCCACTGGTCGCTTTCCCTCATGAGCCGATCGACCTGCCGTGCTCGAGCTGCG TTGCGGACCGAGCAGGCTGGCCTCGGCGAGTTCGCGCCCTGTGCCGACATCGCGAAGGAGGAAGGACGATGA
Upstream 100 bases:
>100_bases GCAAGATACGCAGCAATGCGATAACTTGCATTCGTCTTTCCGTATGCGATATCCTGGCTGCGAACAGTAACGCGACGTGG GCTCGGATGGGAGATGTCGC
Downstream 100 bases:
>100_bases CACCAGCGAACCACGAATCGGCCCTCGTCACGTACGAACTCGACGTGGAAGGGATGACCTGCCGGGATTGTGAGCGGCAC GTCGAGACAGCTGTCGAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 183; Mature: 182
Protein sequence:
>183_residues MSLDSPRDRLSTLARGLEGLATLAGLALTTLACCNWLVIQWLALLLSALGGTAAFTFLVRLETPLLAAVMVILLIASLLA RDTFSRILDLILAALVLVLAVLLLAWEQDPAILWSLPLLGWLFVHRQQTLFVAFAGAAGLRVIHWSLSLMSRSTCRARAA LRTEQAGLGEFAPCADIAKEEGR
Sequences:
>Translated_183_residues MSLDSPRDRLSTLARGLEGLATLAGLALTTLACCNWLVIQWLALLLSALGGTAAFTFLVRLETPLLAAVMVILLIASLLA RDTFSRILDLILAALVLVLAVLLLAWEQDPAILWSLPLLGWLFVHRQQTLFVAFAGAAGLRVIHWSLSLMSRSTCRARAA LRTEQAGLGEFAPCADIAKEEGR >Mature_182_residues SLDSPRDRLSTLARGLEGLATLAGLALTTLACCNWLVIQWLALLLSALGGTAAFTFLVRLETPLLAAVMVILLIASLLAR DTFSRILDLILAALVLVLAVLLLAWEQDPAILWSLPLLGWLFVHRQQTLFVAFAGAAGLRVIHWSLSLMSRSTCRARAAL RTEQAGLGEFAPCADIAKEEGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19761; Mature: 19630
Theoretical pI: Translated: 7.95; Mature: 7.95
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLDSPRDRLSTLARGLEGLATLAGLALTTLACCNWLVIQWLALLLSALGGTAAFTFLVR CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH LETPLLAAVMVILLIASLLARDTFSRILDLILAALVLVLAVLLLAWEQDPAILWSLPLLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH WLFVHRQQTLFVAFAGAAGLRVIHWSLSLMSRSTCRARAALRTEQAGLGEFAPCADIAKE HHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHC EGR CCC >Mature Secondary Structure SLDSPRDRLSTLARGLEGLATLAGLALTTLACCNWLVIQWLALLLSALGGTAAFTFLVR CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH LETPLLAAVMVILLIASLLARDTFSRILDLILAALVLVLAVLLLAWEQDPAILWSLPLLG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH WLFVHRQQTLFVAFAGAAGLRVIHWSLSLMSRSTCRARAALRTEQAGLGEFAPCADIAKE HHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHC EGR CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA