Definition Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence.
Accession NC_011961
Length 917,738

Click here to switch to the map view.

The map label for this gene is 221635787

Identifier: 221635787

GI number: 221635787

Start: 366684

End: 367235

Strand: Reverse

Name: 221635787

Synonym: trd_A0381

Alternate gene names: NA

Gene position: 367235-366684 (Counterclockwise)

Preceding gene: 221635791

Following gene: 221635786

Centisome position: 40.02

GC content: 63.22

Gene sequence:

>552_bases
ATGTCGCTCGACTCGCCGCGCGACCGCCTGTCGACCCTCGCGCGCGGACTGGAAGGGCTGGCCACCCTAGCAGGACTCGC
GCTGACCACGCTGGCCTGCTGTAACTGGCTGGTGATTCAATGGCTCGCTCTCCTGCTTTCCGCACTCGGTGGGACTGCTG
CCTTCACCTTCTTGGTACGTCTGGAGACACCCCTTCTCGCCGCTGTCATGGTCATTCTTCTTATCGCCAGCCTGCTGGCG
CGTGACACCTTCTCCCGCATCCTCGATCTCATACTGGCTGCACTGGTCCTCGTGCTCGCTGTTCTCCTCTTGGCGTGGGA
ACAGGATCCTGCGATCTTGTGGAGCCTCCCCTTGCTCGGCTGGCTCTTTGTCCATCGCCAGCAGACGCTCTTCGTCGCTT
TTGCTGGCGCTGCCGGACTCCGCGTTATCCACTGGTCGCTTTCCCTCATGAGCCGATCGACCTGCCGTGCTCGAGCTGCG
TTGCGGACCGAGCAGGCTGGCCTCGGCGAGTTCGCGCCCTGTGCCGACATCGCGAAGGAGGAAGGACGATGA

Upstream 100 bases:

>100_bases
GCAAGATACGCAGCAATGCGATAACTTGCATTCGTCTTTCCGTATGCGATATCCTGGCTGCGAACAGTAACGCGACGTGG
GCTCGGATGGGAGATGTCGC

Downstream 100 bases:

>100_bases
CACCAGCGAACCACGAATCGGCCCTCGTCACGTACGAACTCGACGTGGAAGGGATGACCTGCCGGGATTGTGAGCGGCAC
GTCGAGACAGCTGTCGAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MSLDSPRDRLSTLARGLEGLATLAGLALTTLACCNWLVIQWLALLLSALGGTAAFTFLVRLETPLLAAVMVILLIASLLA
RDTFSRILDLILAALVLVLAVLLLAWEQDPAILWSLPLLGWLFVHRQQTLFVAFAGAAGLRVIHWSLSLMSRSTCRARAA
LRTEQAGLGEFAPCADIAKEEGR

Sequences:

>Translated_183_residues
MSLDSPRDRLSTLARGLEGLATLAGLALTTLACCNWLVIQWLALLLSALGGTAAFTFLVRLETPLLAAVMVILLIASLLA
RDTFSRILDLILAALVLVLAVLLLAWEQDPAILWSLPLLGWLFVHRQQTLFVAFAGAAGLRVIHWSLSLMSRSTCRARAA
LRTEQAGLGEFAPCADIAKEEGR
>Mature_182_residues
SLDSPRDRLSTLARGLEGLATLAGLALTTLACCNWLVIQWLALLLSALGGTAAFTFLVRLETPLLAAVMVILLIASLLAR
DTFSRILDLILAALVLVLAVLLLAWEQDPAILWSLPLLGWLFVHRQQTLFVAFAGAAGLRVIHWSLSLMSRSTCRARAAL
RTEQAGLGEFAPCADIAKEEGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19761; Mature: 19630

Theoretical pI: Translated: 7.95; Mature: 7.95

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLDSPRDRLSTLARGLEGLATLAGLALTTLACCNWLVIQWLALLLSALGGTAAFTFLVR
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
LETPLLAAVMVILLIASLLARDTFSRILDLILAALVLVLAVLLLAWEQDPAILWSLPLLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
WLFVHRQQTLFVAFAGAAGLRVIHWSLSLMSRSTCRARAALRTEQAGLGEFAPCADIAKE
HHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHC
EGR
CCC
>Mature Secondary Structure 
SLDSPRDRLSTLARGLEGLATLAGLALTTLACCNWLVIQWLALLLSALGGTAAFTFLVR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
LETPLLAAVMVILLIASLLARDTFSRILDLILAALVLVLAVLLLAWEQDPAILWSLPLLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
WLFVHRQQTLFVAFAGAAGLRVIHWSLSLMSRSTCRARAALRTEQAGLGEFAPCADIAKE
HHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHC
EGR
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA