| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is 221635603
Identifier: 221635603
GI number: 221635603
Start: 180289
End: 180852
Strand: Reverse
Name: 221635603
Synonym: trd_A0196
Alternate gene names: NA
Gene position: 180852-180289 (Counterclockwise)
Preceding gene: 221635606
Following gene: 221635601
Centisome position: 19.71
GC content: 67.73
Gene sequence:
>564_bases ATGGCACGCCAGGAGGAGCGGCTCGACCGGCACGAGGAGCGGCTCGATCGCATCGAGGTCGAGATGCGCGAGATGCGTGC CGCCATCACCACATTGACCGAAGCCGTGACCGCGCTGACCCGCAAGACGGAGGAGCACGACCACCGACTGGATCGCCTGT CTCGCCTCTACGGCGCTGAGGTCGAACTCCGCGCCTTGCGCCGGATCCTCGACCTCTACCGAGCAGCTGGCTGGGAACCG GTGACCCGACCGCGGGCAGTCGCCGTGAACGGTGAGTTCGACGTCGTCGTCCTCATGCGTCACCCCGAGCGGGGAGAGTA CTGGTTCATCGTCGAGGCGAAGGCCCGCCTCCATCCGCGCGATGTCGTGGAGTTCGCTGGCAAGCTCCAGCAGCAGCAGG TCCGCCGAGCCCTCCGCGAGCAGGGGGTCAGCGGCCTGACCATGGCATACCTCTACGGCTATTCGGTCGATCGCCGAGTC GACCAGGCCGCCCGCACCCTCGGGATCGGCATCCTCGACGAACTCGGCGAAGCGGTCGCTCCTCAGCCGGTCGCGTTGGA CTGA
Upstream 100 bases:
>100_bases TCGCCAGGAGGAGCGCTCCGCTCGCCTCGAAGAGATCGCCGCCCGTCAGGAAGAACGCCTCGCTCGCCTGGAGGAGATCG CCGCCCGCCAGGAAGAGCGC
Downstream 100 bases:
>100_bases GTCTCGTCGGCGAGCTGGCGTGCGGTCCGGAAGATCGCGTCCAGCATCGCCTCGTCGAGCAATCCCGTCTGCGTGTTGCG CCGGCTGGGATGGTAGCTGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 187; Mature: 186
Protein sequence:
>187_residues MARQEERLDRHEERLDRIEVEMREMRAAITTLTEAVTALTRKTEEHDHRLDRLSRLYGAEVELRALRRILDLYRAAGWEP VTRPRAVAVNGEFDVVVLMRHPERGEYWFIVEAKARLHPRDVVEFAGKLQQQQVRRALREQGVSGLTMAYLYGYSVDRRV DQAARTLGIGILDELGEAVAPQPVALD
Sequences:
>Translated_187_residues MARQEERLDRHEERLDRIEVEMREMRAAITTLTEAVTALTRKTEEHDHRLDRLSRLYGAEVELRALRRILDLYRAAGWEP VTRPRAVAVNGEFDVVVLMRHPERGEYWFIVEAKARLHPRDVVEFAGKLQQQQVRRALREQGVSGLTMAYLYGYSVDRRV DQAARTLGIGILDELGEAVAPQPVALD >Mature_186_residues ARQEERLDRHEERLDRIEVEMREMRAAITTLTEAVTALTRKTEEHDHRLDRLSRLYGAEVELRALRRILDLYRAAGWEPV TRPRAVAVNGEFDVVVLMRHPERGEYWFIVEAKARLHPRDVVEFAGKLQQQQVRRALREQGVSGLTMAYLYGYSVDRRVD QAARTLGIGILDELGEAVAPQPVALD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21585; Mature: 21454
Theoretical pI: Translated: 6.70; Mature: 6.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARQEERLDRHEERLDRIEVEMREMRAAITTLTEAVTALTRKTEEHDHRLDRLSRLYGAE CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC VELRALRRILDLYRAAGWEPVTRPRAVAVNGEFDVVVLMRHPERGEYWFIVEAKARLHPR HHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEEECCCCCCEEEEEECCCCCCHH DVVEFAGKLQQQQVRRALREQGVSGLTMAYLYGYSVDRRVDQAARTLGIGILDELGEAVA HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC PQPVALD CCCCCCC >Mature Secondary Structure ARQEERLDRHEERLDRIEVEMREMRAAITTLTEAVTALTRKTEEHDHRLDRLSRLYGAE CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC VELRALRRILDLYRAAGWEPVTRPRAVAVNGEFDVVVLMRHPERGEYWFIVEAKARLHPR HHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEEECCCCCCEEEEEECCCCCCHH DVVEFAGKLQQQQVRRALREQGVSGLTMAYLYGYSVDRRVDQAARTLGIGILDELGEAVA HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHC PQPVALD CCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA