| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is 221635601
Identifier: 221635601
GI number: 221635601
Start: 178229
End: 179482
Strand: Reverse
Name: 221635601
Synonym: trd_A0195
Alternate gene names: NA
Gene position: 179482-178229 (Counterclockwise)
Preceding gene: 221635603
Following gene: 221635600
Centisome position: 19.56
GC content: 73.68
Gene sequence:
>1254_bases GTGGTCCCCGCGCGGGTGCGCTGTGCGGGCGATTCCCGGTACCGGTCGTGCACGCGCGAGCCGATGAGGCTGCTGCAGCG CCGAGCAGCCCGGCCAGGTGACCGACCAGCACGGCACCGGTCCTGCGCTCCCGACCAGTCAGATGCATGCCTCGGGGGTC GACCGCGCCGCAAGGTGCTCCACGCCTCGCCCCCACAGGGGAGACACCGTACCGCCCCCCACGGCCGGAGCTGGTCCCAC GACGCTGCACACCAACGCCGCACCGATCGTCGAGCACCCGGTATCCCCATCACCTCGGGGTCGGGCGCTGCCTGCCCCGC CGGCCCGGGAGGACCGGCAATCCAGGGCGGGCGCAGTGGGGAGCGTGTCACCGGGATCGTCAACGCCCACGGTTGGGTGC CACCGTGTTTGCCGCGCCTGTGGCGCGGTTGGGTGCGGCAGCGCCTCGCCCCGACAGGGGTGGGCGGCGCATCGCCGGTC GGGCATCCATTTGCCACGGGTGGGCGGCCCGCCCATGCTGTAGGGGTCAGGCGCTGCCTGACCCGCTGGCTTGGCAGGGC CGGCAATCCCCTGGTGGGGCGCTGGTCACGGTGCCGCTGGGATCGCCGAGGCGGCCGATACACGTCACGAGGGGCTGCCG TGCCGCAAGGCGACGGGCGCGGCACACCGCGCCCCTGCACCGGTTGGGCGAGCATCCCCAGCAGGGCCCATGCGCGCCGC GGTTCGGCGGTGCGCTGTCTGCCTTGTAGGGGTCGGGCGTTGCCCGACCCGCCGGCCCGAAGGGCCGGGAATGGGCGTGC GGCGTGGCCGGATGCCCACAATGCCGAGCGACATGGCCGTGAGGATGATTGCCGCCCAGGTCGCCGAGCCGGTGGGGTGG TCAGGCGACGCAGCGCATCGCCCTGGCACCGGTTGCGCGGTCCATCCCCTGTAGCCCGATACTTGCCACGGTTCGGCGCT GCCGACTCCCTGTGTCGGGCTCAGGCGCCGCCCGACCCGCCGGCCCGAAGGGCCGGGAATGGGCGTGCGGTGTCCAGCGC ACGGTCCGTCCTACCGGGGCCAGCAGTCACGCCGCGGGCGACTGGTGACCGCGCCAACGGTCGGCCCATCCAGTGCGTGC CGCGCCGGTGGACGACGTGCCGCGTCGCTCCGACCGACGCGCTGACACTGCAGACAGCGAGATCCCGCTGCATCACGTTC GCTCGCCACATCGTGAGCAGTCGCCTTGCGCTCGGCTCCTACCCGTTCGGGTAG
Upstream 100 bases:
>100_bases CACTCAGTCGGTCAACCGTGCGGTCCATCAGTCCCTCCCGCACGAGTGTGCGCCGAGCGGAGTCGATGGCGCCAGGCCAG CACGGGCAGCGTGTGCCAGT
Downstream 100 bases:
>100_bases GAAGAGACTCCCCGGTTGGAGAGTCGCGAAACTACCCGCCTGGGCGTGTTCGCTCCGTCGTTCCCCGACGAGACTGAAAA CGGGAACGAGGAGCGGCAAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 417; Mature: 417
Protein sequence:
>417_residues MVPARVRCAGDSRYRSCTREPMRLLQRRAARPGDRPARHRSCAPDQSDACLGGRPRRKVLHASPPQGRHRTAPHGRSWSH DAAHQRRTDRRAPGIPITSGSGAACPAGPGGPAIQGGRSGERVTGIVNAHGWVPPCLPRLWRGWVRQRLAPTGVGGASPV GHPFATGGRPAHAVGVRRCLTRWLGRAGNPLVGRWSRCRWDRRGGRYTSRGAAVPQGDGRGTPRPCTGWASIPSRAHARR GSAVRCLPCRGRALPDPPARRAGNGRAAWPDAHNAERHGREDDCRPGRRAGGVVRRRSASPWHRLRGPSPVARYLPRFGA ADSLCRAQAPPDPPARRAGNGRAVSSARSVLPGPAVTPRATGDRANGRPIQCVPRRWTTCRVAPTDALTLQTARSRCITF ARHIVSSRLALGSYPFG
Sequences:
>Translated_417_residues MVPARVRCAGDSRYRSCTREPMRLLQRRAARPGDRPARHRSCAPDQSDACLGGRPRRKVLHASPPQGRHRTAPHGRSWSH DAAHQRRTDRRAPGIPITSGSGAACPAGPGGPAIQGGRSGERVTGIVNAHGWVPPCLPRLWRGWVRQRLAPTGVGGASPV GHPFATGGRPAHAVGVRRCLTRWLGRAGNPLVGRWSRCRWDRRGGRYTSRGAAVPQGDGRGTPRPCTGWASIPSRAHARR GSAVRCLPCRGRALPDPPARRAGNGRAAWPDAHNAERHGREDDCRPGRRAGGVVRRRSASPWHRLRGPSPVARYLPRFGA ADSLCRAQAPPDPPARRAGNGRAVSSARSVLPGPAVTPRATGDRANGRPIQCVPRRWTTCRVAPTDALTLQTARSRCITF ARHIVSSRLALGSYPFG >Mature_417_residues MVPARVRCAGDSRYRSCTREPMRLLQRRAARPGDRPARHRSCAPDQSDACLGGRPRRKVLHASPPQGRHRTAPHGRSWSH DAAHQRRTDRRAPGIPITSGSGAACPAGPGGPAIQGGRSGERVTGIVNAHGWVPPCLPRLWRGWVRQRLAPTGVGGASPV GHPFATGGRPAHAVGVRRCLTRWLGRAGNPLVGRWSRCRWDRRGGRYTSRGAAVPQGDGRGTPRPCTGWASIPSRAHARR GSAVRCLPCRGRALPDPPARRAGNGRAAWPDAHNAERHGREDDCRPGRRAGGVVRRRSASPWHRLRGPSPVARYLPRFGA ADSLCRAQAPPDPPARRAGNGRAVSSARSVLPGPAVTPRATGDRANGRPIQCVPRRWTTCRVAPTDALTLQTARSRCITF ARHIVSSRLALGSYPFG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44937; Mature: 44937
Theoretical pI: Translated: 12.46; Mature: 12.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.8 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 3.8 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVPARVRCAGDSRYRSCTREPMRLLQRRAARPGDRPARHRSCAPDQSDACLGGRPRRKVL CCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCHHHCC HASPPQGRHRTAPHGRSWSHDAAHQRRTDRRAPGIPITSGSGAACPAGPGGPAIQGGRSG CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC ERVTGIVNAHGWVPPCLPRLWRGWVRQRLAPTGVGGASPVGHPFATGGRPAHAVGVRRCL CEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH TRWLGRAGNPLVGRWSRCRWDRRGGRYTSRGAAVPQGDGRGTPRPCTGWASIPSRAHARR HHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHC GSAVRCLPCRGRALPDPPARRAGNGRAAWPDAHNAERHGREDDCRPGRRAGGVVRRRSAS CCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCHHCCCCCC PWHRLRGPSPVARYLPRFGAADSLCRAQAPPDPPARRAGNGRAVSSARSVLPGPAVTPRA HHHHHCCCCHHHHHHHHCCCHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHCCCCCCCCCC TGDRANGRPIQCVPRRWTTCRVAPTDALTLQTARSRCITFARHIVSSRLALGSYPFG CCCCCCCCCEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MVPARVRCAGDSRYRSCTREPMRLLQRRAARPGDRPARHRSCAPDQSDACLGGRPRRKVL CCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCHHHCC HASPPQGRHRTAPHGRSWSHDAAHQRRTDRRAPGIPITSGSGAACPAGPGGPAIQGGRSG CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCC ERVTGIVNAHGWVPPCLPRLWRGWVRQRLAPTGVGGASPVGHPFATGGRPAHAVGVRRCL CEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH TRWLGRAGNPLVGRWSRCRWDRRGGRYTSRGAAVPQGDGRGTPRPCTGWASIPSRAHARR HHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHC GSAVRCLPCRGRALPDPPARRAGNGRAAWPDAHNAERHGREDDCRPGRRAGGVVRRRSAS CCCEEEECCCCCCCCCCHHHHCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCHHCCCCCC PWHRLRGPSPVARYLPRFGAADSLCRAQAPPDPPARRAGNGRAVSSARSVLPGPAVTPRA HHHHHCCCCHHHHHHHHCCCHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHCCCCCCCCCC TGDRANGRPIQCVPRRWTTCRVAPTDALTLQTARSRCITFARHIVSSRLALGSYPFG CCCCCCCCCEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA