| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is 221635412
Identifier: 221635412
GI number: 221635412
Start: 5959
End: 7323
Strand: Reverse
Name: 221635412
Synonym: trd_A0006
Alternate gene names: NA
Gene position: 7323-5959 (Counterclockwise)
Preceding gene: 221635416
Following gene: 221635411
Centisome position: 0.8
GC content: 65.49
Gene sequence:
>1365_bases GTGCGAAAGGAGACCTTCGTCCGGACCATGAGCGACCATGACCCGGGTGGACGATCCGTACCCGCTCTCGAGCCGACAGT CTCCCGTCCGCGGTCCTCTGAGCGGCGGCGTCTCCAGCAGAGCTTCTTCTTCGGCGTGGCTAACGGCGGTTTGCTCCTGC TCGGCGACGCGCTCATCCACCCCGTTTTGGTCCTCACCGTCTTCGTCTCCCAGTTGACCGAGCGCGGCCTCCTCGTGGGA CTCGTCCCGGCGATGAGCGTCAGCCTCTGGTTCCTGCCGCAGGCGATCGCGGCCGCGTTCGTCGAGGGGCGTCGCCGCCA GCTCCCCTGGGCGACCTGGGGAGGGATCGTGCGTGCCCTGGCGATCGCTATCCTGGCCGCGGTCGTGCTCGCTCATGGTG TTGGCCCGAGCCCGACGCTGCTCACTGTGTTCTTCGTTTGTTATGCGGTCTACAACCTCGCTGCCGGTTTTGCCTTCGTT CCCTTGGTGGAACTTACTGCTCGTGCTGTACCGCCTGATCGGCGTGGCTTCTTCTTCAGCCAGCGCAATCTGTGGGGCGC TGTGCTCTCGCTCGCTGCTGGGTTCGCTGTCCAACGGGCACTGGTGTTCGGGGAGGCGGGTTTTGCCGTCCTCTTTGCTG CCTCGTTTGCTGCGCTTTCCCTCGCGGCCTACACCACGCTCTGGATCGTCGAGCGTCCTGTTCCGCCTCGGCCACGCTCC TTTGCCTCCTGGGTGGCCGAGCTCCCGCGCCTCCTCGCGCGCCGCCCAGTTCGTCGCTTTCTGGTCTTTCGTTCCCTCCT CGCCTTGTCCACGATTGCCGACCCCTTCTTCGTCGTGTACGCGCAGCGCGTGCTCGGCCTTCCCGCCGAAACGGTCGGTT TCTATCTTGCTCTTTCCGCTCTCGCCCGGATCCTCGCCAATCCGCTCTGGGGTTGGGTGGTCCAGCATTGGGGCAACCGT CAACTCCTCCAGCTGGCGACTCTGGTGCGCGTCTTCATGCCGCTCGTCGCGCTGGGGATTCAACCGATCCTCGGCTGGGA GCACCTCGTGCCGCGCCTGGACGATCCACAGCAGGTCGTCCTCGTCACCTTCGCCTTTGTTTTTGTCGCCTATGGCGTGA CGCTCTCGGCACAGATGTTGGCCAACTTCACGGCGGTGCTCGAGCTCGCTCACCCCGAGGAGCGTCCGACACTCGTCGGC GTCACCAATACGATCCTGGGCGTCGTTGCCCTCGTGCCGATGCTCGGTGGCCTGGTCGTCGATCGCTTTGGCTACTCAGC GGTTTTCGCGCTCGCGCTCGCGCTTTCCTTGCTCGCGCTGCTGGCCAGCGGTCTCCTGCCAGCGTCCCGTCGCCAGCCAG CGTGA
Upstream 100 bases:
>100_bases CCGCTGCCAGCGAACGGCCGCTTTGGTCGTGCTGCCCGCACCCACCTTCCTCGCGCTCGCCCAGTGGGCGAACGTGCGAT AGGATGAGCGCGGGATCGGT
Downstream 100 bases:
>100_bases ACACCACTGCGGTACCCCGTGCACCCGACCAGCACGGGTGCGGGACGATCGCCCCTGGCTTCCGATCCAGGCTGGAGGTG ACATGGGTGCACCGCTCCCG
Product: major facilitator superfamily MFS_1
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 454; Mature: 454
Protein sequence:
>454_residues MRKETFVRTMSDHDPGGRSVPALEPTVSRPRSSERRRLQQSFFFGVANGGLLLLGDALIHPVLVLTVFVSQLTERGLLVG LVPAMSVSLWFLPQAIAAAFVEGRRRQLPWATWGGIVRALAIAILAAVVLAHGVGPSPTLLTVFFVCYAVYNLAAGFAFV PLVELTARAVPPDRRGFFFSQRNLWGAVLSLAAGFAVQRALVFGEAGFAVLFAASFAALSLAAYTTLWIVERPVPPRPRS FASWVAELPRLLARRPVRRFLVFRSLLALSTIADPFFVVYAQRVLGLPAETVGFYLALSALARILANPLWGWVVQHWGNR QLLQLATLVRVFMPLVALGIQPILGWEHLVPRLDDPQQVVLVTFAFVFVAYGVTLSAQMLANFTAVLELAHPEERPTLVG VTNTILGVVALVPMLGGLVVDRFGYSAVFALALALSLLALLASGLLPASRRQPA
Sequences:
>Translated_454_residues MRKETFVRTMSDHDPGGRSVPALEPTVSRPRSSERRRLQQSFFFGVANGGLLLLGDALIHPVLVLTVFVSQLTERGLLVG LVPAMSVSLWFLPQAIAAAFVEGRRRQLPWATWGGIVRALAIAILAAVVLAHGVGPSPTLLTVFFVCYAVYNLAAGFAFV PLVELTARAVPPDRRGFFFSQRNLWGAVLSLAAGFAVQRALVFGEAGFAVLFAASFAALSLAAYTTLWIVERPVPPRPRS FASWVAELPRLLARRPVRRFLVFRSLLALSTIADPFFVVYAQRVLGLPAETVGFYLALSALARILANPLWGWVVQHWGNR QLLQLATLVRVFMPLVALGIQPILGWEHLVPRLDDPQQVVLVTFAFVFVAYGVTLSAQMLANFTAVLELAHPEERPTLVG VTNTILGVVALVPMLGGLVVDRFGYSAVFALALALSLLALLASGLLPASRRQPA >Mature_454_residues MRKETFVRTMSDHDPGGRSVPALEPTVSRPRSSERRRLQQSFFFGVANGGLLLLGDALIHPVLVLTVFVSQLTERGLLVG LVPAMSVSLWFLPQAIAAAFVEGRRRQLPWATWGGIVRALAIAILAAVVLAHGVGPSPTLLTVFFVCYAVYNLAAGFAFV PLVELTARAVPPDRRGFFFSQRNLWGAVLSLAAGFAVQRALVFGEAGFAVLFAASFAALSLAAYTTLWIVERPVPPRPRS FASWVAELPRLLARRPVRRFLVFRSLLALSTIADPFFVVYAQRVLGLPAETVGFYLALSALARILANPLWGWVVQHWGNR QLLQLATLVRVFMPLVALGIQPILGWEHLVPRLDDPQQVVLVTFAFVFVAYGVTLSAQMLANFTAVLELAHPEERPTLVG VTNTILGVVALVPMLGGLVVDRFGYSAVFALALALSLLALLASGLLPASRRQPA
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49299; Mature: 49299
Theoretical pI: Translated: 11.73; Mature: 11.73
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKETFVRTMSDHDPGGRSVPALEPTVSRPRSSERRRLQQSFFFGVANGGLLLLGDALIH CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHH PVLVLTVFVSQLTERGLLVGLVPAMSVSLWFLPQAIAAAFVEGRRRQLPWATWGGIVRAL HHHHHHHHHHHHHHCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH AIAILAAVVLAHGVGPSPTLLTVFFVCYAVYNLAAGFAFVPLVELTARAVPPDRRGFFFS HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEH QRNLWGAVLSLAAGFAVQRALVFGEAGFAVLFAASFAALSLAAYTTLWIVERPVPPRPRS HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHH FASWVAELPRLLARRPVRRFLVFRSLLALSTIADPFFVVYAQRVLGLPAETVGFYLALSA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHH LARILANPLWGWVVQHWGNRQLLQLATLVRVFMPLVALGIQPILGWEHLVPRLDDPQQVV HHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHCCCCCCHHHHH LVTFAFVFVAYGVTLSAQMLANFTAVLELAHPEERPTLVGVTNTILGVVALVPMLGGLVV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHH DRFGYSAVFALALALSLLALLASGLLPASRRQPA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MRKETFVRTMSDHDPGGRSVPALEPTVSRPRSSERRRLQQSFFFGVANGGLLLLGDALIH CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEHHHHHH PVLVLTVFVSQLTERGLLVGLVPAMSVSLWFLPQAIAAAFVEGRRRQLPWATWGGIVRAL HHHHHHHHHHHHHHCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH AIAILAAVVLAHGVGPSPTLLTVFFVCYAVYNLAAGFAFVPLVELTARAVPPDRRGFFFS HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEH QRNLWGAVLSLAAGFAVQRALVFGEAGFAVLFAASFAALSLAAYTTLWIVERPVPPRPRS HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHH FASWVAELPRLLARRPVRRFLVFRSLLALSTIADPFFVVYAQRVLGLPAETVGFYLALSA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHH LARILANPLWGWVVQHWGNRQLLQLATLVRVFMPLVALGIQPILGWEHLVPRLDDPQQVV HHHHHHCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHCCHHHHCCCCCCHHHHH LVTFAFVFVAYGVTLSAQMLANFTAVLELAHPEERPTLVGVTNTILGVVALVPMLGGLVV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHH DRFGYSAVFALALALSLLALLASGLLPASRRQPA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA