| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is 221635416
Identifier: 221635416
GI number: 221635416
Start: 10006
End: 10329
Strand: Reverse
Name: 221635416
Synonym: trd_A0010
Alternate gene names: NA
Gene position: 10329-10006 (Counterclockwise)
Preceding gene: 221635418
Following gene: 221635412
Centisome position: 1.13
GC content: 66.36
Gene sequence:
>324_bases ATGCCGGGAACTCCCGTGCTGGCGCAGGCGCGCTCGATCACCTCCCGAAGGTCGCTCGTCGTTCTCATCGGCTATTCCTC CCTCGCTCGCTTCCCCGGTCAGCTTCGCGCTCGGCAGGGCTTCTGGCAAGGGCTCTCGCTTCTGATCCGCGCTGCGCACG GATCGCTCAGGTGGATGCCGATCAGCGACTCTTTGTCGTTCACGTGGTCGAGCAGCCTGTTCAGCGACGAGCGGAGCAGC CGACGCCCCGCGCGCGGCTGCTCACTGGCCTACCAGATGGATCGGGTATCGACCTCTTCCAGCCCGGGGATGACCAGGCC GTGA
Upstream 100 bases:
>100_bases CTGGAACAGCGTGTCGCGTCGCACGGGGCAACCGGTTTCCAGGCTGGCGACCCCGTGTGTCACCACCTCGCGCCCGTCGG GTGTCAGGATCCCGATCACC
Downstream 100 bases:
>100_bases CCAGTGTCGAGATGAGGTGCGGATCTTCGCACCGGAAAAGCGGCACTCGTTTCGGCGACCGAGCGTGCGCGCGGTGCTTC TTCCACCCGCCGGTTGGAAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 107; Mature: 106
Protein sequence:
>107_residues MPGTPVLAQARSITSRRSLVVLIGYSSLARFPGQLRARQGFWQGLSLLIRAAHGSLRWMPISDSLSFTWSSSLFSDERSS RRPARGCSLAYQMDRVSTSSSPGMTRP
Sequences:
>Translated_107_residues MPGTPVLAQARSITSRRSLVVLIGYSSLARFPGQLRARQGFWQGLSLLIRAAHGSLRWMPISDSLSFTWSSSLFSDERSS RRPARGCSLAYQMDRVSTSSSPGMTRP >Mature_106_residues PGTPVLAQARSITSRRSLVVLIGYSSLARFPGQLRARQGFWQGLSLLIRAAHGSLRWMPISDSLSFTWSSSLFSDERSSR RPARGCSLAYQMDRVSTSSSPGMTRP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11805; Mature: 11673
Theoretical pI: Translated: 12.38; Mature: 12.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGTPVLAQARSITSRRSLVVLIGYSSLARFPGQLRARQGFWQGLSLLIRAAHGSLRWMP CCCCCHHHHHHHCCCCCCEEEEEECHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE ISDSLSFTWSSSLFSDERSSRRPARGCSLAYQMDRVSTSSSPGMTRP CCCCCCEEECCHHHCCCHHCCCCCCCCHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure PGTPVLAQARSITSRRSLVVLIGYSSLARFPGQLRARQGFWQGLSLLIRAAHGSLRWMP CCCCHHHHHHHCCCCCCEEEEEECHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE ISDSLSFTWSSSLFSDERSSRRPARGCSLAYQMDRVSTSSSPGMTRP CCCCCCEEECCHHHCCCHHCCCCCCCCHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA