| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221633724
Identifier: 221633724
GI number: 221633724
Start: 1758300
End: 1758971
Strand: Reverse
Name: 221633724
Synonym: trd_1751
Alternate gene names: NA
Gene position: 1758971-1758300 (Counterclockwise)
Preceding gene: 221633725
Following gene: 221633723
Centisome position: 87.82
GC content: 66.37
Gene sequence:
>672_bases ATGACCGATCGCAGCAGTCACTTGGACGAAGAGCGACTCGCGCTCCTGGCGAGCGAGGAGCCGGATGCGGAGGTATCGGC GCATCTCGCCCAATGCGAGTTCTGTCGCCGCCGCTGGCAGGAGTATCGCGCGGTTCGCCAGGCGTTGCGCTCCTTGCCCG CGCCGCCGCTCCCGCGCGACTTCGCGGCAGCGCTGAATCATGCCCCGCCCCTTCGACGGGCAACCTGGTGGTGGCGCTAT CGCACAGTGCTTCGCGCCGGGACGCTCCTCGCTGCGACGCTCTTGGTCGTCCTTCTCTCTGCGGTCGTCGCCGCTCCTCG TTTCCTGCCCAGCGAGGACCGGCAGACCACGCTCGGCCCCTCACCAGTGGCGGAACTCGCACCGGCGGCTCAACCAAACA CCGAAGAAATGCGCTCAGCTGGGATCGCGTCGCAAACGCCTGCCATTCTCGCGAGCGAGACGCCGAGCAGTACGTTCGCC GCCGCCACCGAAGCTACCGCCAAGGTACCGGCGACCTCGGAGCAGGAACCCGTTTCGGAAATGCCTCGTACCATTCGTCT TCTCGCCTGGGTGGGTATCGTTGTCCTCGCTTTTCTCACGCTCGCTGGATTCTGGTTCGGGTTTCTCTTACCTGCCCGGC GGGTCCGCCGGTTTCCGGTCGTGCGTCGCTGA
Upstream 100 bases:
>100_bases CGATCCGCGAGCGAGGGAACTCTTGGGGCTGAGCGGTCGTCTCCCGGATAGGGAGGGTGAGTCGCCGGAACGCCTGATCG AAGGTGAGTGACGGTTCTCG
Downstream 100 bases:
>100_bases GCGGGAACCGAAACTGCCTCTCGCTCGTCATCTCTGCGGAGACATGGAGCGGAAAGGAGAAAGCGATGCAGAGAACCTGG GTTCCTCTCGCTGTCGTGCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 223; Mature: 222
Protein sequence:
>223_residues MTDRSSHLDEERLALLASEEPDAEVSAHLAQCEFCRRRWQEYRAVRQALRSLPAPPLPRDFAAALNHAPPLRRATWWWRY RTVLRAGTLLAATLLVVLLSAVVAAPRFLPSEDRQTTLGPSPVAELAPAAQPNTEEMRSAGIASQTPAILASETPSSTFA AATEATAKVPATSEQEPVSEMPRTIRLLAWVGIVVLAFLTLAGFWFGFLLPARRVRRFPVVRR
Sequences:
>Translated_223_residues MTDRSSHLDEERLALLASEEPDAEVSAHLAQCEFCRRRWQEYRAVRQALRSLPAPPLPRDFAAALNHAPPLRRATWWWRY RTVLRAGTLLAATLLVVLLSAVVAAPRFLPSEDRQTTLGPSPVAELAPAAQPNTEEMRSAGIASQTPAILASETPSSTFA AATEATAKVPATSEQEPVSEMPRTIRLLAWVGIVVLAFLTLAGFWFGFLLPARRVRRFPVVRR >Mature_222_residues TDRSSHLDEERLALLASEEPDAEVSAHLAQCEFCRRRWQEYRAVRQALRSLPAPPLPRDFAAALNHAPPLRRATWWWRYR TVLRAGTLLAATLLVVLLSAVVAAPRFLPSEDRQTTLGPSPVAELAPAAQPNTEEMRSAGIASQTPAILASETPSSTFAA ATEATAKVPATSEQEPVSEMPRTIRLLAWVGIVVLAFLTLAGFWFGFLLPARRVRRFPVVRR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24643; Mature: 24511
Theoretical pI: Translated: 10.51; Mature: 10.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDRSSHLDEERLALLASEEPDAEVSAHLAQCEFCRRRWQEYRAVRQALRSLPAPPLPRD CCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH FAAALNHAPPLRRATWWWRYRTVLRAGTLLAATLLVVLLSAVVAAPRFLPSEDRQTTLGP HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC SPVAELAPAAQPNTEEMRSAGIASQTPAILASETPSSTFAAATEATAKVPATSEQEPVSE CCHHHHCCCCCCCHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHCCCCCCCCCHHHH MPRTIRLLAWVGIVVLAFLTLAGFWFGFLLPARRVRRFPVVRR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure TDRSSHLDEERLALLASEEPDAEVSAHLAQCEFCRRRWQEYRAVRQALRSLPAPPLPRD CCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH FAAALNHAPPLRRATWWWRYRTVLRAGTLLAATLLVVLLSAVVAAPRFLPSEDRQTTLGP HHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC SPVAELAPAAQPNTEEMRSAGIASQTPAILASETPSSTFAAATEATAKVPATSEQEPVSE CCHHHHCCCCCCCHHHHHHCCCCCCCCCCEECCCCCHHHHHHHHHHHCCCCCCCCCHHHH MPRTIRLLAWVGIVVLAFLTLAGFWFGFLLPARRVRRFPVVRR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA