| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221633562
Identifier: 221633562
GI number: 221633562
Start: 1572335
End: 1573624
Strand: Reverse
Name: 221633562
Synonym: trd_1586
Alternate gene names: NA
Gene position: 1573624-1572335 (Counterclockwise)
Preceding gene: 221633564
Following gene: 221633561
Centisome position: 78.56
GC content: 75.66
Gene sequence:
>1290_bases GTGAGCATCCCGCGGCTCGAGCCGAGCGCAGCCGACCGCGCCCGCTGGGCGCGCTACCGCGACTACCTGGCCTTTTGGGA GGGGCGGCAGTGGACGGACCGCCCGCGCCCCGGCGAGACGCGCCTGACGCTCAACTACGCGCGCGCCCTGGTGCGCAAGG TGACCAGCGTGCTGTTCTCCCGCCCGGTGCGCTACAGCGTGCCCGAGTCGGCGGCGGCCGAGCGGTACCTGGCGCGCCTG GCACGCGAGGACGACTGGGCCGGGCTGGACGACGCGGCGGCGCTCGATGCCGCCGTGCTGGGGGATGCGGCCTTCAAGGT GACCTGGGATGCCGCCCGGCGCCGGCCGCGCGTCACGCCGATCGATCCCGCGCAGCTGGTCGCGGCCACCCGGCCGGACG ATGCGCGCGAGGTGGTGGCGGTGGCCCACGAGTACCCGCTCGAGCCCGCCGCGCTGGAGGCGGTCTTCGGGCTGCGCCTG CCCCGGCTGGGGCCGGAGGGGTGGGTGACGGTGCGCGAGGAGTGGACGGCCGAACGCTACCGGCTGCTCGTCGCCGGGGA GACGGTGCACGACGATGCCAACCCCTACGGCTGGATTCCCTACGTCCTCGTCCCCAACAGCCCGGCGCCCGGTGGCCCCT GGGGGGAGAGCGACCTGGCTGACCTGCTCGACGTCTGCCGGGAGCTGAACCGGCGGCTGACGGTGCTCTCGCGCATCCTG CAGGTCTCCGGCAACCCGATCGTCGTGCTGGAGAACGTGACGGCCAGCGAGGGGATCCGGGCGGAGGAGGGGGCAGTCTG GGAGCTGCCGGAGGGGAGCCGGGCGTACCTCTTGGACATGCTCTCCGGTGGGGGCGTGGCGCTGCACCTGGAGTACGTGC GGCTGCTCTTCCAGGTGCTGCACGACCTGGCCGAGGTGCCGCGGGCCGCCTTCGGCGACCACGGGCGCGACCTCTCCGGT GCGGCGCTGGAGCTGGAGCTGCAGCCGCTGGTGCACAAGGTGGAGCGCAAGCGGCGGAGCTGGGAGCGGGCGCTCCGGCA GCGCGCCCAGCGGGTGCTCGATTTGGCCGAGCGGCTGGGGGGCGAGTCGTTCGGCGGCGCGCGCGGGGTGGAGGTCGTCT GGGGGCCGCTCCTGCCGGTGGACGAGGAGCGGGCGGTGCGGGTGCAGGTCGGGTTGGTGGCGGCGGGCATCCGCTCGCGC CTGACGGCGGCACGCGAGCTGGGGTCGCTCGACCCCGAGGCGGAGCTGGCGCGGGTGGCGGCCGAGCGCGCCGCCGGGCT GGGCGGGTGA
Upstream 100 bases:
>100_bases CGAGTCCGGTGTCCGCTTTCGGTTCGCTCGCGCTGTGTCCCTTCATGGAGGGGTCGCGCGGCCGGGGGCCGGTCGCGCGC CAGAGGAAGGGAGGGCGGCG
Downstream 100 bases:
>100_bases GCCGGGCGATGGGCGGAGTGCGCGCGACACCGCCGACACGGCGGACGCGCCCGACCGCGGTGCGGGAACCCACGACCGGG GATGCACCGCGCCACGTTGT
Product: phage domain-containing protein
Products: NA
Alternate protein names: Phage Portal; Phage Domain-Containing Protein
Number of amino acids: Translated: 429; Mature: 428
Protein sequence:
>429_residues MSIPRLEPSAADRARWARYRDYLAFWEGRQWTDRPRPGETRLTLNYARALVRKVTSVLFSRPVRYSVPESAAAERYLARL AREDDWAGLDDAAALDAAVLGDAAFKVTWDAARRRPRVTPIDPAQLVAATRPDDAREVVAVAHEYPLEPAALEAVFGLRL PRLGPEGWVTVREEWTAERYRLLVAGETVHDDANPYGWIPYVLVPNSPAPGGPWGESDLADLLDVCRELNRRLTVLSRIL QVSGNPIVVLENVTASEGIRAEEGAVWELPEGSRAYLLDMLSGGGVALHLEYVRLLFQVLHDLAEVPRAAFGDHGRDLSG AALELELQPLVHKVERKRRSWERALRQRAQRVLDLAERLGGESFGGARGVEVVWGPLLPVDEERAVRVQVGLVAAGIRSR LTAARELGSLDPEAELARVAAERAAGLGG
Sequences:
>Translated_429_residues MSIPRLEPSAADRARWARYRDYLAFWEGRQWTDRPRPGETRLTLNYARALVRKVTSVLFSRPVRYSVPESAAAERYLARL AREDDWAGLDDAAALDAAVLGDAAFKVTWDAARRRPRVTPIDPAQLVAATRPDDAREVVAVAHEYPLEPAALEAVFGLRL PRLGPEGWVTVREEWTAERYRLLVAGETVHDDANPYGWIPYVLVPNSPAPGGPWGESDLADLLDVCRELNRRLTVLSRIL QVSGNPIVVLENVTASEGIRAEEGAVWELPEGSRAYLLDMLSGGGVALHLEYVRLLFQVLHDLAEVPRAAFGDHGRDLSG AALELELQPLVHKVERKRRSWERALRQRAQRVLDLAERLGGESFGGARGVEVVWGPLLPVDEERAVRVQVGLVAAGIRSR LTAARELGSLDPEAELARVAAERAAGLGG >Mature_428_residues SIPRLEPSAADRARWARYRDYLAFWEGRQWTDRPRPGETRLTLNYARALVRKVTSVLFSRPVRYSVPESAAAERYLARLA REDDWAGLDDAAALDAAVLGDAAFKVTWDAARRRPRVTPIDPAQLVAATRPDDAREVVAVAHEYPLEPAALEAVFGLRLP RLGPEGWVTVREEWTAERYRLLVAGETVHDDANPYGWIPYVLVPNSPAPGGPWGESDLADLLDVCRELNRRLTVLSRILQ VSGNPIVVLENVTASEGIRAEEGAVWELPEGSRAYLLDMLSGGGVALHLEYVRLLFQVLHDLAEVPRAAFGDHGRDLSGA ALELELQPLVHKVERKRRSWERALRQRAQRVLDLAERLGGESFGGARGVEVVWGPLLPVDEERAVRVQVGLVAAGIRSRL TAARELGSLDPEAELARVAAERAAGLGG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47353; Mature: 47222
Theoretical pI: Translated: 5.60; Mature: 5.60
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.2 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIPRLEPSAADRARWARYRDYLAFWEGRQWTDRPRPGETRLTLNYARALVRKVTSVLFS CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHC RPVRYSVPESAAAERYLARLAREDDWAGLDDAAALDAAVLGDAAFKVTWDAARRRPRVTP CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEEHHHHCCCCCCC IDPAQLVAATRPDDAREVVAVAHEYPLEPAALEAVFGLRLPRLGPEGWVTVREEWTAERY CCHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCEEEHHHHCCCCE RLLVAGETVHDDANPYGWIPYVLVPNSPAPGGPWGESDLADLLDVCRELNRRLTVLSRIL EEEEECCEECCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH QVSGNPIVVLENVTASEGIRAEEGAVWELPEGSRAYLLDMLSGGGVALHLEYVRLLFQVL HCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCHHHHEEHHCCCCEEEEHHHHHHHHHHH HDLAEVPRAAFGDHGRDLSGAALELELQPLVHKVERKRRSWERALRQRAQRVLDLAERLG HHHHHCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GESFGGARGVEVVWGPLLPVDEERAVRVQVGLVAAGIRSRLTAARELGSLDPEAELARVA CCCCCCCCCCEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH AERAAGLGG HHHHCCCCC >Mature Secondary Structure SIPRLEPSAADRARWARYRDYLAFWEGRQWTDRPRPGETRLTLNYARALVRKVTSVLFS CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHC RPVRYSVPESAAAERYLARLAREDDWAGLDDAAALDAAVLGDAAFKVTWDAARRRPRVTP CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEEHHHHCCCCCCC IDPAQLVAATRPDDAREVVAVAHEYPLEPAALEAVFGLRLPRLGPEGWVTVREEWTAERY CCHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCEEEHHHHCCCCE RLLVAGETVHDDANPYGWIPYVLVPNSPAPGGPWGESDLADLLDVCRELNRRLTVLSRIL EEEEECCEECCCCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH QVSGNPIVVLENVTASEGIRAEEGAVWELPEGSRAYLLDMLSGGGVALHLEYVRLLFQVL HCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCHHHHEEHHCCCCEEEEHHHHHHHHHHH HDLAEVPRAAFGDHGRDLSGAALELELQPLVHKVERKRRSWERALRQRAQRVLDLAERLG HHHHHCCHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GESFGGARGVEVVWGPLLPVDEERAVRVQVGLVAAGIRSRLTAARELGSLDPEAELARVA CCCCCCCCCCEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH AERAAGLGG HHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA