Definition Thermomicrobium roseum DSM 5159 chromosome, complete genome.
Accession NC_011959
Length 2,003,006

Click here to switch to the map view.

The map label for this gene is 221633561

Identifier: 221633561

GI number: 221633561

Start: 1570872

End: 1571168

Strand: Reverse

Name: 221633561

Synonym: trd_1585

Alternate gene names: NA

Gene position: 1571168-1570872 (Counterclockwise)

Preceding gene: 221633562

Following gene: 221633560

Centisome position: 78.44

GC content: 76.09

Gene sequence:

>297_bases
ATGGACGAACCGCTCTTCACCGAAACGCTCGCGGTGGCCGGGGTGCCGGCGGTGGTGCTGGTGCCGCTCCTGGTGGAGGC
GGCCAAGCGCGCTGGACTCCCCACCCGCTACGCGCCGCTGGCGACCCTGGTCGCGGCCGGCCTCGTCGCGGCGCTGGCCG
AGGCGGCGCCGGTGGTGCCGCAGCTCGCGCCCTTCGCCCGCTGGGCGGTGGCCACGCTGCTCTTGGCACTGGGAGCGAGC
GGCGCCTACGAGACCGCCCGCTTCCTGCGGCGCGAGCTGGGCGCTGAACGGGGATGA

Upstream 100 bases:

>100_bases
CGCCCAGCCGCGCCATCCAGTCCCCCACATGGGGCTCGCGGATTCAGTCCGGGGCGTTGCCCCGGGGCGCATCGTTCTCG
TTCCCAGAAAGGAGGTATCG

Downstream 100 bases:

>100_bases
CGGGCCGGGCGCTCCTGCGCCGGGTGCTGGCCGACCCGCTCGCCTGCTCGCGCCTGCTCCTGCCGGAGCGCGCGCTGCGC
GGCTACCAAGCGGGGCCGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 98; Mature: 98

Protein sequence:

>98_residues
MDEPLFTETLAVAGVPAVVLVPLLVEAAKRAGLPTRYAPLATLVAAGLVAALAEAAPVVPQLAPFARWAVATLLLALGAS
GAYETARFLRRELGAERG

Sequences:

>Translated_98_residues
MDEPLFTETLAVAGVPAVVLVPLLVEAAKRAGLPTRYAPLATLVAAGLVAALAEAAPVVPQLAPFARWAVATLLLALGAS
GAYETARFLRRELGAERG
>Mature_98_residues
MDEPLFTETLAVAGVPAVVLVPLLVEAAKRAGLPTRYAPLATLVAAGLVAALAEAAPVVPQLAPFARWAVATLLLALGAS
GAYETARFLRRELGAERG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10062; Mature: 10062

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEPLFTETLAVAGVPAVVLVPLLVEAAKRAGLPTRYAPLATLVAAGLVAALAEAAPVVP
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHH
QLAPFARWAVATLLLALGASGAYETARFLRRELGAERG
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MDEPLFTETLAVAGVPAVVLVPLLVEAAKRAGLPTRYAPLATLVAAGLVAALAEAAPVVP
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCHH
QLAPFARWAVATLLLALGASGAYETARFLRRELGAERG
HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA