| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221633564
Identifier: 221633564
GI number: 221633564
Start: 1576479
End: 1578695
Strand: Reverse
Name: 221633564
Synonym: trd_1588
Alternate gene names: NA
Gene position: 1578695-1576479 (Counterclockwise)
Preceding gene: 221633565
Following gene: 221633562
Centisome position: 78.82
GC content: 66.98
Gene sequence:
>2217_bases ATGGGTAAGCGTTTGGTCAGTCTGCTCACAGCGCTGGCGCTGGCGGTGAGCGCGTTCGCCTCGCTCACGGTCGCGCCGGC TGGGGCGGTGGTCGAGGAGATCACCGGCTGGATCTACTTCCCATTCGTCCCCAACGGGGAAGAGTACGGGAACATGGGGC CGTGGTACGGCACGGTGACCGTCCAGAACCCGAACGATGCCTTCATCGAAGTCGAGCTTCGAAAGGCCGATGGCACGAGT ATAACTACCGCGACGCTGGAGCCGTTCGCGGCGAAGACGTGGAACTCGTCGGCCCTCTTCGGCGACGGCAACGGCGGTGG GGTGGTCGTGCGGCCGGGGTCGGTGACCCGCACGGTTGTCCGTGGAGCGTCACCCAACACCGTCGACCGCATCAACAACC CTTGCGTAGGCGCAGTGCTGTCGATCCGTGTCCGCCAGGGCAACACTGTCTTCAACGAGTGGAACGGGAGCGAGACAAGT CCTACCGGTGACTACACCTGGGCCGTGGTCGGAAATCAAATCGTGATCGACTGGGGCGTCGCGGATGACCCGACTACTGG TACTCCTGCCGACTTTCTGGGTGATACCGAGCCGGCTCCAGGGACGGAGTACACAGTCACGGTGAGATGCACAGAAACTA TCGGCCTGCCGATCGCTGGCGTGGCCAAGATCGTCGCTCCGGTCGCGAGCAACGCTGGTCGCACCTCGGCGCAGCACGAG GCAGTGAGCGGCTACTCGGCGCTGCCGCAGACCGACGTGGAGATCGGTGGGCAGCACGCGCTCGTCTTCCCGATCGTCCA GACCAACAACGGCTGGAACTCGGTGCTGCACGTCACCAACTTCGACTCGCGCAGCAACTGCAGCGTCACGGTGACGCTCT ACCAGTCGCCCTCGGGCTACAGCGACCCGAGCTTCGGCCAGTTCATCAGGCTGCTGAGGCGGGGCGAGACCTGGCACATC GACCTCAAGGAACAGGGTGTGCCGGACGGCTGGGTCGGCCAGGCCTGGGTCGATAGCGACTGCGAGGTGGCGGCGACGGT CGACCGTGTGAAGCCGACGCAGCCGTGGGGTGACCCGGTCAACATGGCGCTGACCAACCAGGCGCTGCCGCAGGGTGCCG GCAACAGGGTGCAGGCGCTGCCGCTGATCTTCCAGGGCTACAACGGCTGGAACAGCGGCATCTCGATGGCGAACCTGAGC GACGTCGCGCCAGCGACCGTGCAGATCACCTACTACAACTCGGCCGGTGTGGCGGTCGGCACCGAGAGCCGGGTCATCCA GCCGCGGGCGATGGAGTTCGTGTACAAGCCGGCGACGACCGATGTGGGGATCGGCGGGTTCGGCCACGCGCTGGTGGTCT CCACCCAGCCGGTGCTGGTGGCGGTCGACTCGGTGAAGTACACCGGCATCGACCAGGACGTCGGGCAGGCGCTCGGCTAC GTCGCGCAGTCGGGCACCGACATCCCGCACGGGCAGCTGTACATGCCGCTGTTCCAGAAGCAGGGCCTGCTCTCGGGCGG CAACGACAACAGCGGTGTGGCGCTGTTCAACGCGGGTGACCGGCCGGTGCGCGTGTCGCTCGTGTTCTACAGCTCGACCG GCTCGCCGACTGCGCCGACCCTGACCGCGCCGATCATCGCCTCGATCCCGGCGCACGGTGGCTACATCGCCTACGCGCCG AACTACGGCGAGATGCCGGGCGGGTTCCAGGGCTCGGTCGTGGTCACGCAGCTCGACGGGCTGGGGCCGATCGTGGGCGT CTCGAACAACGTCAACTACGACGTGCAGTTCGACGGCTCGGCGGCCTACAACATGCCGCGCGCCCAGGGCTGGGAGCTCA TTTGCACGACTGAGCAGAACCCAGCGCCTGGTGACCCGACGCCCGACTGCACGCTGAGCGGCATGCTCGGGCCGGGCGTG GTGCCAGGCGGCGCGCCGATCCTGCTGCACGTCATCGACAATCCGGCGGTCGACGATATGTCGTTCGCCGTGCCGGCGAG CCCTGACCAGAACACGCTGGCCCTGACGACGGCAGCCGACGGCTCGTTCAGCGCACCGCTGTACTGGCGAACGGACGGGC CTCCTGCCGACGGCCAGTTCACCGTCACCGTCGAGCTCTACTACGACGTCGACGGGAACGGCATGCTCGGGCCGAACGAC CTGTTGCTGACGACGGTCACGTGCAGTGGCCGTTCTCGGCCGCAGCAGCCGGCGTGA
Upstream 100 bases:
>100_bases ACGAGCGGGTGGAAGAGCGGCGGCCGGCCGGGCGGTCCGGCCGGTGCGGATGTGTCGTCGACGTGCTGACACGCCGATGA CGCGAGGAGGGTGAACTCGT
Downstream 100 bases:
>100_bases GCCGAGCGCGATCGGTCTGGGTGACTGGGTGAGGGCGGGGTCACACGACCCCGCCCTCGTTCGTTCAGCAGGAGTCGGCC CGCACGACCAGGCGGCCTGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 738; Mature: 737
Protein sequence:
>738_residues MGKRLVSLLTALALAVSAFASLTVAPAGAVVEEITGWIYFPFVPNGEEYGNMGPWYGTVTVQNPNDAFIEVELRKADGTS ITTATLEPFAAKTWNSSALFGDGNGGGVVVRPGSVTRTVVRGASPNTVDRINNPCVGAVLSIRVRQGNTVFNEWNGSETS PTGDYTWAVVGNQIVIDWGVADDPTTGTPADFLGDTEPAPGTEYTVTVRCTETIGLPIAGVAKIVAPVASNAGRTSAQHE AVSGYSALPQTDVEIGGQHALVFPIVQTNNGWNSVLHVTNFDSRSNCSVTVTLYQSPSGYSDPSFGQFIRLLRRGETWHI DLKEQGVPDGWVGQAWVDSDCEVAATVDRVKPTQPWGDPVNMALTNQALPQGAGNRVQALPLIFQGYNGWNSGISMANLS DVAPATVQITYYNSAGVAVGTESRVIQPRAMEFVYKPATTDVGIGGFGHALVVSTQPVLVAVDSVKYTGIDQDVGQALGY VAQSGTDIPHGQLYMPLFQKQGLLSGGNDNSGVALFNAGDRPVRVSLVFYSSTGSPTAPTLTAPIIASIPAHGGYIAYAP NYGEMPGGFQGSVVVTQLDGLGPIVGVSNNVNYDVQFDGSAAYNMPRAQGWELICTTEQNPAPGDPTPDCTLSGMLGPGV VPGGAPILLHVIDNPAVDDMSFAVPASPDQNTLALTTAADGSFSAPLYWRTDGPPADGQFTVTVELYYDVDGNGMLGPND LLLTTVTCSGRSRPQQPA
Sequences:
>Translated_738_residues MGKRLVSLLTALALAVSAFASLTVAPAGAVVEEITGWIYFPFVPNGEEYGNMGPWYGTVTVQNPNDAFIEVELRKADGTS ITTATLEPFAAKTWNSSALFGDGNGGGVVVRPGSVTRTVVRGASPNTVDRINNPCVGAVLSIRVRQGNTVFNEWNGSETS PTGDYTWAVVGNQIVIDWGVADDPTTGTPADFLGDTEPAPGTEYTVTVRCTETIGLPIAGVAKIVAPVASNAGRTSAQHE AVSGYSALPQTDVEIGGQHALVFPIVQTNNGWNSVLHVTNFDSRSNCSVTVTLYQSPSGYSDPSFGQFIRLLRRGETWHI DLKEQGVPDGWVGQAWVDSDCEVAATVDRVKPTQPWGDPVNMALTNQALPQGAGNRVQALPLIFQGYNGWNSGISMANLS DVAPATVQITYYNSAGVAVGTESRVIQPRAMEFVYKPATTDVGIGGFGHALVVSTQPVLVAVDSVKYTGIDQDVGQALGY VAQSGTDIPHGQLYMPLFQKQGLLSGGNDNSGVALFNAGDRPVRVSLVFYSSTGSPTAPTLTAPIIASIPAHGGYIAYAP NYGEMPGGFQGSVVVTQLDGLGPIVGVSNNVNYDVQFDGSAAYNMPRAQGWELICTTEQNPAPGDPTPDCTLSGMLGPGV VPGGAPILLHVIDNPAVDDMSFAVPASPDQNTLALTTAADGSFSAPLYWRTDGPPADGQFTVTVELYYDVDGNGMLGPND LLLTTVTCSGRSRPQQPA >Mature_737_residues GKRLVSLLTALALAVSAFASLTVAPAGAVVEEITGWIYFPFVPNGEEYGNMGPWYGTVTVQNPNDAFIEVELRKADGTSI TTATLEPFAAKTWNSSALFGDGNGGGVVVRPGSVTRTVVRGASPNTVDRINNPCVGAVLSIRVRQGNTVFNEWNGSETSP TGDYTWAVVGNQIVIDWGVADDPTTGTPADFLGDTEPAPGTEYTVTVRCTETIGLPIAGVAKIVAPVASNAGRTSAQHEA VSGYSALPQTDVEIGGQHALVFPIVQTNNGWNSVLHVTNFDSRSNCSVTVTLYQSPSGYSDPSFGQFIRLLRRGETWHID LKEQGVPDGWVGQAWVDSDCEVAATVDRVKPTQPWGDPVNMALTNQALPQGAGNRVQALPLIFQGYNGWNSGISMANLSD VAPATVQITYYNSAGVAVGTESRVIQPRAMEFVYKPATTDVGIGGFGHALVVSTQPVLVAVDSVKYTGIDQDVGQALGYV AQSGTDIPHGQLYMPLFQKQGLLSGGNDNSGVALFNAGDRPVRVSLVFYSSTGSPTAPTLTAPIIASIPAHGGYIAYAPN YGEMPGGFQGSVVVTQLDGLGPIVGVSNNVNYDVQFDGSAAYNMPRAQGWELICTTEQNPAPGDPTPDCTLSGMLGPGVV PGGAPILLHVIDNPAVDDMSFAVPASPDQNTLALTTAADGSFSAPLYWRTDGPPADGQFTVTVELYYDVDGNGMLGPNDL LLTTVTCSGRSRPQQPA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 77339; Mature: 77208
Theoretical pI: Translated: 4.21; Mature: 4.21
Prosite motif: PS00018 EF_HAND_1 ; PS00147 ARGINASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKRLVSLLTALALAVSAFASLTVAPAGAVVEEITGWIYFPFVPNGEEYGNMGPWYGTVT CCHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHCCCEEEEEECCCCHHCCCCCCEEEEEE VQNPNDAFIEVELRKADGTSITTATLEPFAAKTWNSSALFGDGNGGGVVVRPGSVTRTVV EECCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEECCCCCEEEECCCCCEEEEE RGASPNTVDRINNPCVGAVLSIRVRQGNTVFNEWNGSETSPTGDYTWAVVGNQIVIDWGV ECCCCCHHHHCCCCCEEEEEEEEEECCCEEEECCCCCCCCCCCCEEEEEECCEEEEEECC ADDPTTGTPADFLGDTEPAPGTEYTVTVRCTETIGLPIAGVAKIVAPVASNAGRTSAQHE CCCCCCCCCHHHCCCCCCCCCCEEEEEEEEEHCCCCCHHHHHHHHHHHHCCCCCCCCHHH AVSGYSALPQTDVEIGGQHALVFPIVQTNNGWNSVLHVTNFDSRSNCSVTVTLYQSPSGY HHCCCCCCCCCCCEECCCEEEEEEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCC SDPSFGQFIRLLRRGETWHIDLKEQGVPDGWVGQAWVDSDCEVAATVDRVKPTQPWGDPV CCCCHHHHHHHHHCCCEEEEEHHHCCCCCCCCCCEEECCCCEEEEEHHCCCCCCCCCCCC NMALTNQALPQGAGNRVQALPLIFQGYNGWNSGISMANLSDVAPATVQITYYNSAGVAVG EEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCEECCCCCCCCEEEEEEEECCCCEEEC TESRVIQPRAMEFVYKPATTDVGIGGFGHALVVSTQPVLVAVDSVKYTGIDQDVGQALGY CCCCEECCCCEEEEECCCCCCCCCCCCCCEEEEECCCEEEEEECEEECCCCHHHHHHHHH VAQSGTDIPHGQLYMPLFQKQGLLSGGNDNSGVALFNAGDRPVRVSLVFYSSTGSPTAPT HHHCCCCCCCCEEEEEHHHCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCC LTAPIIASIPAHGGYIAYAPNYGEMPGGFQGSVVVTQLDGLGPIVGVSNNVNYDVQFDGS EECCCEEECCCCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCEEEEEECCC AAYNMPRAQGWELICTTEQNPAPGDPTPDCTLSGMLGPGVVPGGAPILLHVIDNPAVDDM CCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCCC SFAVPASPDQNTLALTTAADGSFSAPLYWRTDGPPADGQFTVTVELYYDVDGNGMLGPND EEEECCCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCEEEEEEEEEEEECCCCCCCCCC LLLTTVTCSGRSRPQQPA EEEEEEEECCCCCCCCCC >Mature Secondary Structure GKRLVSLLTALALAVSAFASLTVAPAGAVVEEITGWIYFPFVPNGEEYGNMGPWYGTVT CHHHHHHHHHHHHHHHHHHHEEECCCHHHHHHCCCEEEEEECCCCHHCCCCCCEEEEEE VQNPNDAFIEVELRKADGTSITTATLEPFAAKTWNSSALFGDGNGGGVVVRPGSVTRTVV EECCCCEEEEEEEEECCCCEEEEEECCCCCCCCCCCCEEEECCCCCEEEECCCCCEEEEE RGASPNTVDRINNPCVGAVLSIRVRQGNTVFNEWNGSETSPTGDYTWAVVGNQIVIDWGV ECCCCCHHHHCCCCCEEEEEEEEEECCCEEEECCCCCCCCCCCCEEEEEECCEEEEEECC ADDPTTGTPADFLGDTEPAPGTEYTVTVRCTETIGLPIAGVAKIVAPVASNAGRTSAQHE CCCCCCCCCHHHCCCCCCCCCCEEEEEEEEEHCCCCCHHHHHHHHHHHHCCCCCCCCHHH AVSGYSALPQTDVEIGGQHALVFPIVQTNNGWNSVLHVTNFDSRSNCSVTVTLYQSPSGY HHCCCCCCCCCCCEECCCEEEEEEEEEECCCCCEEEEEECCCCCCCCEEEEEEEECCCCC SDPSFGQFIRLLRRGETWHIDLKEQGVPDGWVGQAWVDSDCEVAATVDRVKPTQPWGDPV CCCCHHHHHHHHHCCCEEEEEHHHCCCCCCCCCCEEECCCCEEEEEHHCCCCCCCCCCCC NMALTNQALPQGAGNRVQALPLIFQGYNGWNSGISMANLSDVAPATVQITYYNSAGVAVG EEEEECCCCCCCCCCCEEEEEEEEECCCCCCCCCEECCCCCCCCEEEEEEEECCCCEEEC TESRVIQPRAMEFVYKPATTDVGIGGFGHALVVSTQPVLVAVDSVKYTGIDQDVGQALGY CCCCEECCCCEEEEECCCCCCCCCCCCCCEEEEECCCEEEEEECEEECCCCHHHHHHHHH VAQSGTDIPHGQLYMPLFQKQGLLSGGNDNSGVALFNAGDRPVRVSLVFYSSTGSPTAPT HHHCCCCCCCCEEEEEHHHCCCCCCCCCCCCCEEEEECCCCCEEEEEEEEECCCCCCCCC LTAPIIASIPAHGGYIAYAPNYGEMPGGFQGSVVVTQLDGLGPIVGVSNNVNYDVQFDGS EECCCEEECCCCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCEEEEEECCC AAYNMPRAQGWELICTTEQNPAPGDPTPDCTLSGMLGPGVVPGGAPILLHVIDNPAVDDM CCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCCC SFAVPASPDQNTLALTTAADGSFSAPLYWRTDGPPADGQFTVTVELYYDVDGNGMLGPND EEEECCCCCCCEEEEEEECCCCCCCCEEECCCCCCCCCEEEEEEEEEEEECCCCCCCCCC LLLTTVTCSGRSRPQQPA EEEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA