| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221633477
Identifier: 221633477
GI number: 221633477
Start: 1480703
End: 1481332
Strand: Reverse
Name: 221633477
Synonym: trd_1499
Alternate gene names: NA
Gene position: 1481332-1480703 (Counterclockwise)
Preceding gene: 221633478
Following gene: 221633476
Centisome position: 73.96
GC content: 65.08
Gene sequence:
>630_bases ATGCGGATCCGGAAGGGAATCGTTCTCCTGCTCCTCGGTACGAGTGCTCTGATCGCCTGTCGCTCAGCCCCGCCGACGCC GACCGTCGTGCCGAGTCCGACCAGTGTCCCGACCGCGGTGGCACCCACTCCGACGCCGGTGAGGACGCCTGCGCCGGTGG TTCTCAAGCCGCCCGATCTCGTCCTGAAGGTCGCAAGCGGCGAGCAGCAGGCGACGATCGGTCCGTTCTTTTGGGTGCTC GATTCCGGCTTTGCCGGCGAGACGACCGCTCCCGGGCTCGTCCCTCCGAGCGAACAGCCGCTCGCCGTTCGGCCGGGGGA GACGCTCAGCTTTGCATTCAGCGAGGACCGGATTCCGGAGAAGGTGTCGCTCGCAGTCTATCCACAGGAGGGGAATTTCG AGCCGATCTCGCCCGCTCCGGATGCACCGAAAGGGTTCGTCGCCAAGACCGATCCCGTTGTGACGGCTGACCCGGAACGC AGCGGTGCTGGCTTCCAGTGGACGATGCCGGAACTGAGCCCGGGTACCTACTTCCTGCGTGTGGAAGTGGAATGGCCACA GCACCCGAAGAATCCCCGACCCGACAAGGTACCGCGGGCAGTGTATGCCTTTTGGATTCGAGTCTCCTGA
Upstream 100 bases:
>100_bases GTTTGCTGTGACAGTGAGGGATTCGGAAAGAGCTGTGTGGTACAGTCGGCGCGGTTGCCGGATACCTGGCCGCCGGTGTT CTGGAAGGGAAGAGGGGTCG
Downstream 100 bases:
>100_bases ACGGTCGAAACAGTGGCGCTGGACACTGGCTTACCGGCAGGCTTGTTACTCGCTAGTCTTCTCGGTAGCATGCTGGGGTT AGGCTGGCATGCGGTGTTTG
Product: putative lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 209; Mature: 209
Protein sequence:
>209_residues MRIRKGIVLLLLGTSALIACRSAPPTPTVVPSPTSVPTAVAPTPTPVRTPAPVVLKPPDLVLKVASGEQQATIGPFFWVL DSGFAGETTAPGLVPPSEQPLAVRPGETLSFAFSEDRIPEKVSLAVYPQEGNFEPISPAPDAPKGFVAKTDPVVTADPER SGAGFQWTMPELSPGTYFLRVEVEWPQHPKNPRPDKVPRAVYAFWIRVS
Sequences:
>Translated_209_residues MRIRKGIVLLLLGTSALIACRSAPPTPTVVPSPTSVPTAVAPTPTPVRTPAPVVLKPPDLVLKVASGEQQATIGPFFWVL DSGFAGETTAPGLVPPSEQPLAVRPGETLSFAFSEDRIPEKVSLAVYPQEGNFEPISPAPDAPKGFVAKTDPVVTADPER SGAGFQWTMPELSPGTYFLRVEVEWPQHPKNPRPDKVPRAVYAFWIRVS >Mature_209_residues MRIRKGIVLLLLGTSALIACRSAPPTPTVVPSPTSVPTAVAPTPTPVRTPAPVVLKPPDLVLKVASGEQQATIGPFFWVL DSGFAGETTAPGLVPPSEQPLAVRPGETLSFAFSEDRIPEKVSLAVYPQEGNFEPISPAPDAPKGFVAKTDPVVTADPER SGAGFQWTMPELSPGTYFLRVEVEWPQHPKNPRPDKVPRAVYAFWIRVS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22394; Mature: 22394
Theoretical pI: Translated: 7.37; Mature: 7.37
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRIRKGIVLLLLGTSALIACRSAPPTPTVVPSPTSVPTAVAPTPTPVRTPAPVVLKPPDL CCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEECCCCE VLKVASGEQQATIGPFFWVLDSGFAGETTAPGLVPPSEQPLAVRPGETLSFAFSEDRIPE EEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCC KVSLAVYPQEGNFEPISPAPDAPKGFVAKTDPVVTADPERSGAGFQWTMPELSPGTYFLR EEEEEEECCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCCCCEEEECCCCCCCEEEEE VEVEWPQHPKNPRPDKVPRAVYAFWIRVS EEEECCCCCCCCCCCCCCCEEEEEEEEEC >Mature Secondary Structure MRIRKGIVLLLLGTSALIACRSAPPTPTVVPSPTSVPTAVAPTPTPVRTPAPVVLKPPDL CCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCEEECCCCE VLKVASGEQQATIGPFFWVLDSGFAGETTAPGLVPPSEQPLAVRPGETLSFAFSEDRIPE EEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCC KVSLAVYPQEGNFEPISPAPDAPKGFVAKTDPVVTADPERSGAGFQWTMPELSPGTYFLR EEEEEEECCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCCCCEEEECCCCCCCEEEEE VEVEWPQHPKNPRPDKVPRAVYAFWIRVS EEEECCCCCCCCCCCCCCCEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA