| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221633112
Identifier: 221633112
GI number: 221633112
Start: 1113904
End: 1114767
Strand: Reverse
Name: 221633112
Synonym: trd_1128
Alternate gene names: NA
Gene position: 1114767-1113904 (Counterclockwise)
Preceding gene: 221633113
Following gene: 221633111
Centisome position: 55.65
GC content: 60.53
Gene sequence:
>864_bases ATGGGGAATAAGGGACTCGCGCAGAACCGGCAAGCACTGCTCAAGGCGTTCCAGGCGAGTCTGAAGGCGCGGCCGGGTGT AGAGTACATCAATTTGGTGATCTTCCGGCCGCTCGGATTCATCGTGGCCTGTGCCCTGTTGCCAACGCGAGTCAAACCAG AGCAGGTCGTCATTGCTCATACCGGACTCGGTCTCCTGGCAGCTGGGTGCCTGGCTCGTGGCTGGGAGCGAGCGGCGGCA GTACTCCTCCAGGTGGTAACCGTTCTCGACAATGCCGATGGTCAACTGGCTCGCTTGCGGCAGCAGGAGAGCGAACTGGG CCGATATCTCGATACCGAACTCGATACGCTGGTCAATACAGCTCTTTTCGCAGCGATCGGATACCGTACACGAGGCTGGC GAGCGTCATTGGCTGCACTATCGGCCTTTACTGGCCTTCTGAGCTGGGATTTCAATCTCGAGTACTTGTACCGGGTAGCG AGGGGTGAAGTCTTGCGAGCCGCAGTGCGCGATCCGGATCGTCGGGCGGTCCAGCTCGCTCGCGCTGTCTACCGGCTCGT CTTCGCACCCCAGGACGCGATGATTCGCTGGCTGGAAGAACTGGGCTTGTGGCTGTCCGTCGGACACCATGCCCGTGAAG AGCGCGTCAGACGCTCCTGGTGGCATCCGATCGTGGTCACGGTGGCAGCGAACTTGGGTCGTTCGACGCAATATTTGTGG CTCGGCATCTTCGCGTGGCGACGGCGTCTCGATTCTTACCCAACGTTCGTCCTGAGTCAGCTCTTGATTCCTCTTCTCCT GACGATCTGGCGCTGGTCCGCCGTCCGGCGTCAGGTGAGCGGTAGACGCGAGGGGATTGTCTAA
Upstream 100 bases:
>100_bases TTCCGATTCGTCACGGCCGGTAGCGATATCGGCTTCCTCGTGCAAGGAGCGCTGCGTGGCGTCGAACAGCTCGGTCTGAC TGCACAGGTCGGACGAGGAT
Downstream 100 bases:
>100_bases CAGGAGTGAGAACCTCAGCGGGCGCTTTCCGGGCAAGGGCTGTGGAGAGCCGGCAAGGTGCTGCGCTGACGGTCCGTTCT TGCCCCGGGGCTGCGAGTGG
Product: CDP-alcohol phosphatidyltransferase family
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 287; Mature: 286
Protein sequence:
>287_residues MGNKGLAQNRQALLKAFQASLKARPGVEYINLVIFRPLGFIVACALLPTRVKPEQVVIAHTGLGLLAAGCLARGWERAAA VLLQVVTVLDNADGQLARLRQQESELGRYLDTELDTLVNTALFAAIGYRTRGWRASLAALSAFTGLLSWDFNLEYLYRVA RGEVLRAAVRDPDRRAVQLARAVYRLVFAPQDAMIRWLEELGLWLSVGHHAREERVRRSWWHPIVVTVAANLGRSTQYLW LGIFAWRRRLDSYPTFVLSQLLIPLLLTIWRWSAVRRQVSGRREGIV
Sequences:
>Translated_287_residues MGNKGLAQNRQALLKAFQASLKARPGVEYINLVIFRPLGFIVACALLPTRVKPEQVVIAHTGLGLLAAGCLARGWERAAA VLLQVVTVLDNADGQLARLRQQESELGRYLDTELDTLVNTALFAAIGYRTRGWRASLAALSAFTGLLSWDFNLEYLYRVA RGEVLRAAVRDPDRRAVQLARAVYRLVFAPQDAMIRWLEELGLWLSVGHHAREERVRRSWWHPIVVTVAANLGRSTQYLW LGIFAWRRRLDSYPTFVLSQLLIPLLLTIWRWSAVRRQVSGRREGIV >Mature_286_residues GNKGLAQNRQALLKAFQASLKARPGVEYINLVIFRPLGFIVACALLPTRVKPEQVVIAHTGLGLLAAGCLARGWERAAAV LLQVVTVLDNADGQLARLRQQESELGRYLDTELDTLVNTALFAAIGYRTRGWRASLAALSAFTGLLSWDFNLEYLYRVAR GEVLRAAVRDPDRRAVQLARAVYRLVFAPQDAMIRWLEELGLWLSVGHHAREERVRRSWWHPIVVTVAANLGRSTQYLWL GIFAWRRRLDSYPTFVLSQLLIPLLLTIWRWSAVRRQVSGRREGIV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32462; Mature: 32331
Theoretical pI: Translated: 11.36; Mature: 11.36
Prosite motif: PS00379 CDP_ALCOHOL_P_TRANSF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGNKGLAQNRQALLKAFQASLKARPGVEYINLVIFRPLGFIVACALLPTRVKPEQVVIAH CCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE TGLGLLAAGCLARGWERAAAVLLQVVTVLDNADGQLARLRQQESELGRYLDTELDTLVNT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ALFAAIGYRTRGWRASLAALSAFTGLLSWDFNLEYLYRVARGEVLRAAVRDPDRRAVQLA HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH RAVYRLVFAPQDAMIRWLEELGLWLSVGHHAREERVRRSWWHPIVVTVAANLGRSTQYLW HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHH LGIFAWRRRLDSYPTFVLSQLLIPLLLTIWRWSAVRRQVSGRREGIV HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure GNKGLAQNRQALLKAFQASLKARPGVEYINLVIFRPLGFIVACALLPTRVKPEQVVIAH CCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE TGLGLLAAGCLARGWERAAAVLLQVVTVLDNADGQLARLRQQESELGRYLDTELDTLVNT CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ALFAAIGYRTRGWRASLAALSAFTGLLSWDFNLEYLYRVARGEVLRAAVRDPDRRAVQLA HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH RAVYRLVFAPQDAMIRWLEELGLWLSVGHHAREERVRRSWWHPIVVTVAANLGRSTQYLW HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHH LGIFAWRRRLDSYPTFVLSQLLIPLLLTIWRWSAVRRQVSGRREGIV HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA