Click here to switch to the map view.

The map label for this gene is ydaM [H]

Identifier: 221633105

GI number: 221633105

Start: 1103979

End: 1105886

Strand: Reverse

Name: ydaM [H]

Synonym: trd_1121

Alternate gene names: 221633105

Gene position: 1105886-1103979 (Counterclockwise)

Preceding gene: 221633106

Following gene: 221633104

Centisome position: 55.21

GC content: 60.48

Gene sequence:

>1908_bases
ATGCTGGTTCGTACGTACCGACCGTGCCAGCCGCAGGTGACCCGCTCGCGGGAGCGGATCGGTGAGGCGCTGGTTTCTCG
AGGACTCTTGCGTCCGGAAGACCTGGAACGAGCGCTCGAGTACCAGCGCCGGACGGGTGACCGGATCGGCCGCATTCTGA
TCGCACTCGGTTTGGTCAAGCGACAGCAGCTCTACCAGGTGCTGGCTGAACTCTGGGGACATCCATACGTCGATCTTTTA
CGCGAGCCGCTGGATGCTCGACTGGCGCGACTTTTCGACCCCGAGGCGCTCGTGCAACGACGGTGCTTCCCGGTGCGGCG
CGTCGGCAACGAGGTATTCGTGGCGACAGCTGAGCCACCCGGAGCCGAACTCGAGGAGTACATCCGATCCGTTCTGGGGT
CGGTCACGGTACGACCGCTCGTCACGAGCGAATGGGATATCGACTACGCCATCCGAACAATCTTTCGTGATCTCGTGCTG
GATCGGGCAGCCTTGGGCCTGTACTACCGAAGTCCGGACGAGAGTGCGCGGCAGGTACTCGTCCGGTGGCAGAAGGTCGC
GCTCGCGCTCCTGTTGATCCTGGTCGCGGCCGGATTACTCATGGTGCCGACACGCACTGCGGTCATCGCTTCAGCGCTCG
TCAATAGTGTGCTCTTCGTTTTCGTGCTCTTTCATTTCGTGGTGGCCATGGCCGGAGCGAAGCACGAGCACGTGCAGGCG
ATCTCCCCGGAAGAGGTGCAGGCACTACGCGACGACGAACTTCCGATGTACACCGTGCTCGTGCCGGTCTATCGCGAAGC
CAACGTCGTGCCGCATCTCATCGAGAATCTCCGCAACCTGGACTACCCGGCGAGCAAACTCGAAATCTTGCTCTTGATCG
AAGAGGACGACGAGGAGACATTGGCTGCGGCCAAGGCGGCACGGCCACCGGAGACGGTAACCTTCATCGTCGTCCCCAAC
GGGCTTCCCAAAACGAAGCCGAAAGCGTGCAATGTCGGCTTGCTCTTCGCTCGCGGTGAGTTCCTCACGATCTACGACGC
GGAAGATCGCCCGGAACCAGATCAGCTCAAGAAGGCGATCTTGGCCTTCCGCAAAGGATCACCGGACCTCGTCTGTGTTC
AGGCAGCGCTGAACTATTACAACGCGACCGAGAATCTGCTCACCCGCATGTTCACGCTCGAGTACTCGTATTGGTTCGAC
TACGTTCTGACTGGTCTGGATCGCTTGCGCTTGCCGATTCCGCTCGGTGGGACGAGCAACCATTTTCGGGTGGGTCGCCT
CCGGGAACTCGGTGGGTGGGATCCGTTCAATGTGACCGAGGATGCTGATCTGGGTATCCGGGCAGCGGCCCGCGGTTACC
GAGTTGGGGTGATCAACTCTACAACCTGGGAGGAAGCGAATAACCACGTCGGCAATTGGATCCGCCAGCGCTCGCGCTGG
ATCAAGGGCTACCTGCAGACGGTTCTCGTGCACACCCGCCATCCGCTGCGCCTCGTCCGCACAGCTGGCATCCGCAATAC
GTTCGGCTTCGTGTTGCTGATCGGTGGCGCGCCCTTTGCCTTTCTCTCGCTCATTCCGCTCTGGTCGTTGACGCTCACGT
GGATCGTGACGCGTACCCACGCATTCGATATCTTGTTCCCACCGGTCGTGCTGTATATCAGCCTGTTCAATCTCCTGATC
GGGAACGGTGTGATGATCTATCTCGGCATGCTCGCCGGGTTCAAGCGACGTCGCTACCAGCTCATCCCCTTCGCGCTGCT
CAACCCCTTCTATTGGATCCTGCACTCGATCGCATCCTACAAGGCGGTCTGGCAATTGATCACGAAGCCCTTCTACTGGG
AGAAGACGCGTCATGGCCTCAGCCGTTATCTCGAAACCGGTTCCGCAGCCAGCGTCGCCGCCGAGTGA

Upstream 100 bases:

>100_bases
CCAGACACGATGAGGACGGGGGTCTCTCGGCGACCCTCGTCGCTCTGTCGATGATTGCCGGTGAGTGAACTGTTTCTCGT
GGTCGTGACGAGGAGACTCG

Downstream 100 bases:

>100_bases
CGAGCTCCGTCTCGTCGATTTGAGCTGGCGCGCTCATCTCCTGCGCGTCGCCCTTTTCAGTCTTCCTTTCCTGGCGCTCG
CGCTGGTGACGTATCGGTAC

Product: group 2 family glycosyl transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 635; Mature: 635

Protein sequence:

>635_residues
MLVRTYRPCQPQVTRSRERIGEALVSRGLLRPEDLERALEYQRRTGDRIGRILIALGLVKRQQLYQVLAELWGHPYVDLL
REPLDARLARLFDPEALVQRRCFPVRRVGNEVFVATAEPPGAELEEYIRSVLGSVTVRPLVTSEWDIDYAIRTIFRDLVL
DRAALGLYYRSPDESARQVLVRWQKVALALLLILVAAGLLMVPTRTAVIASALVNSVLFVFVLFHFVVAMAGAKHEHVQA
ISPEEVQALRDDELPMYTVLVPVYREANVVPHLIENLRNLDYPASKLEILLLIEEDDEETLAAAKAARPPETVTFIVVPN
GLPKTKPKACNVGLLFARGEFLTIYDAEDRPEPDQLKKAILAFRKGSPDLVCVQAALNYYNATENLLTRMFTLEYSYWFD
YVLTGLDRLRLPIPLGGTSNHFRVGRLRELGGWDPFNVTEDADLGIRAAARGYRVGVINSTTWEEANNHVGNWIRQRSRW
IKGYLQTVLVHTRHPLRLVRTAGIRNTFGFVLLIGGAPFAFLSLIPLWSLTLTWIVTRTHAFDILFPPVVLYISLFNLLI
GNGVMIYLGMLAGFKRRRYQLIPFALLNPFYWILHSIASYKAVWQLITKPFYWEKTRHGLSRYLETGSAASVAAE

Sequences:

>Translated_635_residues
MLVRTYRPCQPQVTRSRERIGEALVSRGLLRPEDLERALEYQRRTGDRIGRILIALGLVKRQQLYQVLAELWGHPYVDLL
REPLDARLARLFDPEALVQRRCFPVRRVGNEVFVATAEPPGAELEEYIRSVLGSVTVRPLVTSEWDIDYAIRTIFRDLVL
DRAALGLYYRSPDESARQVLVRWQKVALALLLILVAAGLLMVPTRTAVIASALVNSVLFVFVLFHFVVAMAGAKHEHVQA
ISPEEVQALRDDELPMYTVLVPVYREANVVPHLIENLRNLDYPASKLEILLLIEEDDEETLAAAKAARPPETVTFIVVPN
GLPKTKPKACNVGLLFARGEFLTIYDAEDRPEPDQLKKAILAFRKGSPDLVCVQAALNYYNATENLLTRMFTLEYSYWFD
YVLTGLDRLRLPIPLGGTSNHFRVGRLRELGGWDPFNVTEDADLGIRAAARGYRVGVINSTTWEEANNHVGNWIRQRSRW
IKGYLQTVLVHTRHPLRLVRTAGIRNTFGFVLLIGGAPFAFLSLIPLWSLTLTWIVTRTHAFDILFPPVVLYISLFNLLI
GNGVMIYLGMLAGFKRRRYQLIPFALLNPFYWILHSIASYKAVWQLITKPFYWEKTRHGLSRYLETGSAASVAAE
>Mature_635_residues
MLVRTYRPCQPQVTRSRERIGEALVSRGLLRPEDLERALEYQRRTGDRIGRILIALGLVKRQQLYQVLAELWGHPYVDLL
REPLDARLARLFDPEALVQRRCFPVRRVGNEVFVATAEPPGAELEEYIRSVLGSVTVRPLVTSEWDIDYAIRTIFRDLVL
DRAALGLYYRSPDESARQVLVRWQKVALALLLILVAAGLLMVPTRTAVIASALVNSVLFVFVLFHFVVAMAGAKHEHVQA
ISPEEVQALRDDELPMYTVLVPVYREANVVPHLIENLRNLDYPASKLEILLLIEEDDEETLAAAKAARPPETVTFIVVPN
GLPKTKPKACNVGLLFARGEFLTIYDAEDRPEPDQLKKAILAFRKGSPDLVCVQAALNYYNATENLLTRMFTLEYSYWFD
YVLTGLDRLRLPIPLGGTSNHFRVGRLRELGGWDPFNVTEDADLGIRAAARGYRVGVINSTTWEEANNHVGNWIRQRSRW
IKGYLQTVLVHTRHPLRLVRTAGIRNTFGFVLLIGGAPFAFLSLIPLWSLTLTWIVTRTHAFDILFPPVVLYISLFNLLI
GNGVMIYLGMLAGFKRRRYQLIPFALLNPFYWILHSIASYKAVWQLITKPFYWEKTRHGLSRYLETGSAASVAAE

Specific function: Unknown

COG id: COG1215

COG function: function code M; Glycosyltransferases, probably involved in cell wall biogenesis

Gene ontology:

Cell location: Membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: NA

Molecular weight: Translated: 72168; Mature: 72168

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVRTYRPCQPQVTRSRERIGEALVSRGLLRPEDLERALEYQRRTGDRIGRILIALGLVK
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQQLYQVLAELWGHPYVDLLREPLDARLARLFDPEALVQRRCFPVRRVGNEVFVATAEPP
HHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCHHHHHHHHCCHHHHCCCEEEEEECCCC
GAELEEYIRSVLGSVTVRPLVTSEWDIDYAIRTIFRDLVLDRAALGLYYRSPDESARQVL
CHHHHHHHHHHHCCCEECEEECCCCCHHHHHHHHHHHHHHHHHHHHCEECCCCHHHHHHH
VRWQKVALALLLILVAAGLLMVPTRTAVIASALVNSVLFVFVLFHFVVAMAGAKHEHVQA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
ISPEEVQALRDDELPMYTVLVPVYREANVVPHLIENLRNLDYPASKLEILLLIEEDDEET
CCHHHHHHHCCCCCCEEEEEEHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCHHH
LAAAKAARPPETVTFIVVPNGLPKTKPKACNVGLLFARGEFLTIYDAEDRPEPDQLKKAI
HHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCHHHHHHHH
LAFRKGSPDLVCVQAALNYYNATENLLTRMFTLEYSYWFDYVLTGLDRLRLPIPLGGTSN
HHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
HFRVGRLRELGGWDPFNVTEDADLGIRAAARGYRVGVINSTTWEEANNHVGNWIRQRSRW
CEECHHHHHCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
IKGYLQTVLVHTRHPLRLVRTAGIRNTFGFVLLIGGAPFAFLSLIPLWSLTLTWIVTRTH
HHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
AFDILFPPVVLYISLFNLLIGNGVMIYLGMLAGFKRRRYQLIPFALLNPFYWILHSIASY
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHH
KAVWQLITKPFYWEKTRHGLSRYLETGSAASVAAE
HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MLVRTYRPCQPQVTRSRERIGEALVSRGLLRPEDLERALEYQRRTGDRIGRILIALGLVK
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQQLYQVLAELWGHPYVDLLREPLDARLARLFDPEALVQRRCFPVRRVGNEVFVATAEPP
HHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHCCHHHHHHHHCCHHHHCCCEEEEEECCCC
GAELEEYIRSVLGSVTVRPLVTSEWDIDYAIRTIFRDLVLDRAALGLYYRSPDESARQVL
CHHHHHHHHHHHCCCEECEEECCCCCHHHHHHHHHHHHHHHHHHHHCEECCCCHHHHHHH
VRWQKVALALLLILVAAGLLMVPTRTAVIASALVNSVLFVFVLFHFVVAMAGAKHEHVQA
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
ISPEEVQALRDDELPMYTVLVPVYREANVVPHLIENLRNLDYPASKLEILLLIEEDDEET
CCHHHHHHHCCCCCCEEEEEEHHHHCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCHHH
LAAAKAARPPETVTFIVVPNGLPKTKPKACNVGLLFARGEFLTIYDAEDRPEPDQLKKAI
HHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCEEEEECCCCCCCHHHHHHHH
LAFRKGSPDLVCVQAALNYYNATENLLTRMFTLEYSYWFDYVLTGLDRLRLPIPLGGTSN
HHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
HFRVGRLRELGGWDPFNVTEDADLGIRAAARGYRVGVINSTTWEEANNHVGNWIRQRSRW
CEECHHHHHCCCCCCCCCCCCCCCCHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHH
IKGYLQTVLVHTRHPLRLVRTAGIRNTFGFVLLIGGAPFAFLSLIPLWSLTLTWIVTRTH
HHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
AFDILFPPVVLYISLFNLLIGNGVMIYLGMLAGFKRRRYQLIPFALLNPFYWILHSIASY
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHH
KAVWQLITKPFYWEKTRHGLSRYLETGSAASVAAE
HHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]