| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is ppc [H]
Identifier: 221633046
GI number: 221633046
Start: 1032709
End: 1035495
Strand: Reverse
Name: ppc [H]
Synonym: trd_1060
Alternate gene names: 221633046
Gene position: 1035495-1032709 (Counterclockwise)
Preceding gene: 221633048
Following gene: 221633041
Centisome position: 51.7
GC content: 62.04
Gene sequence:
>2787_bases ATGGCGGGCGGACGAGCGCTCGACGATGAGCGGTCAGCGAAGGCCTTGAGAGCTGAGCCGATCGAGGGGCTGCGCAACGA GGTCAACCTGCTCGGTGCTCTCTTGGGAGACGTGCTCCGCGAACAGGGGGGTACTGAGCTCTTCGACCTCGTGGAGTGGG CACGGCTTCAGTCGATCACGGGGCGAACTGTTGGAAACATGAGTGATGCCTTTCGTGGGTTACTCGCGCGGCTCGAGGAA GCGAGCGACGAGGAGATCTTCGGACTCGTTCGTGCGTTCGGTATCTTCTTTCACTTGATCAATCTGGCCGAGCAGCATCA CCGTGTCCGAACGCTGCGCCAGCGTGAACGACAAGAACGGGCTTTGCACGAATCACTGGAAGAAGCGTTCCTGACGTTGC GCGACCGTGGTGTCGAGCCGGATCGAGTGAAGGAACTGCTCGACGACTTGTTGCTCTTTCCCGTCCTCACGGCGCATCCC TCGGAGACGCGACGACGGACGGTTCTCCAACGGCTGGCTGCACTCGGGCAGTTGATCCAACAGCTGGACGATACGCGACT GTCGCCGCGGGAGCGTGATTGGCTCTTCGATCGCCTGCGCGAGGAAATCACGCTTCTCTGGCAGACGGCGGAAACGCGCC TGGCACGGCCGACACCGCTGGATGAGGTACGGAGCACGATCGCGATTCTCGCTGGTCCGATCTACGATGTCGTTCCCTTC TTCCGGCGTGCGCTCCGGCGAGCCATTCTTCGGGCATATCCAGAACTGACGAGCGAAGCGCTTTGGAACAGGCTACCGAT CCGAATCGGCAGCTGGGTCGGAGGCGATCGTGACGGCAACCCGGCGGTCACGGCAGCCGTCACCGAGGCGACGGCTCGGC TGATGCGCGAGGCTATTCTTCGACGCTACCTCGAGGAGGTCGTCGATCTCCGGCGAGCGCTGAGCGTCTCGGCACGTTTG CGCGGTGCCTCCGATGAGTTAATGGCGACGATCGACCAGGAGCGGGAACGACTCGGTTTTGCGCCAGTTCGAGCATGGGC TGACGAGCCGTATCGGCGGATGCTCGGGCTCATCGAGGAGCGCTTGCGGCGAACTGAGCGCGGAGAACAGGGAGGCTATG CGGGTCCTGAGGAATTTGCGACTCACTTGAAGGTGATGGCTGACTCTCTTCGGCAGCATGAAGGGCACTGGATCGCGGAT GGCCGGCTCGCTGACTTGATCGCACGCGTGGACGTTTTCGGCTTCCATCTTGCCGAACTGGAGATTCGTCAAGATGCAGC TCGGTACCGCGAAGCGCTCGCCGAGCTCTTTGCGTTGGTAGGGTGCGCCGGCTATGAGGCGATGCCGAGCGACGAGCGGG AGCATCTCGTGCTGACTCGCCTCGAGCAAGGTGTCTTTGGTCTTCCGCGGGGAGCGCTCAGTCCTGACACACGAGAAGTT CTCGCTACCTTCGACGCGATCGGACGGATCCAGCGGCTGAGCGGCGAGCGAGCTTGCCACACAGTGATCGTCTCGATGAC TCGCGAGCCGGCCGACGTGCTCGGTACGGTCGTGCTGGCACGCGAGGCGGGGCTCATCGATTTTGCGACGGACGGTGCCG TTCGGCATTGCCGGATCGACGTGGTTCCGCTGTTCGAGCAGATCGCCGAGCTGGATCGTTGTGACCAGATTCTCGCGCGC CTGTTGGCCAATCCGATCTATCGCACGGTCGTGAGGCTACGCGGTAACCAGCAGGAGGTGATGCTCGGCTACTCCGACAG TAACAAAGATGGAGGGTATGTTTCCTCCAATTGGCGCATCTATCGTGCGCAGGAGCGTTTGGCTGAGGTTGCACGACAGT TCGGTGCCCAGCTCCGCCTCTTTTACGGTCGTGGTGGAGCGATCGGCCGAGGAGGAGGCCCGATGGGACGGGCTATTCGT GCCCGGCCAGCAGCAGCTCGTCGACCCGTTCTCAAGACAACCGAGCAGGGAGAAGTGATCTTTGCCCGCTATAGCGACCC GGCCATCGCACTGCGGCATTGGGAACAAATGACGCATGCATCGATCGGTTCTCTCGGGAGCGATCCTGATCCGTCGATGC CCGAATCGTGGTACCGCATGATGGAGCAGTTGGCGACTTGGTCGCAAGAGGCCTACGAGCGGCTGGTCAAGGACGAGCCA ACGTTCGTCCGCTTCTTCACCAGTGCGACGCCTTTCCCAGAACTCGCTAGTTTGAACCTCGCGTCGCGGCCAGTCGCACG CCGGGGTAGTCCCGAAAGCGGGCTTTGCTTTGCTGATCTGCGGGCGATCCCGTGGGTTTTCAGCTGGACACAAACGCGTG TGAATCTGCCAGGATGGTACGGACTGGGAACAGCGCTCGAGCGCGCGCTGGCTGCGGGGGAGGAATCCACACTCCGCGAG ATGTATTACCGCTGGCCGTTCTTCGAAATGCTGCTCGATAACGCGCAAATCAGCCTCGCGACAGCGGACATGCTGATCGC CGAGTGCTACGCGACGCTCGCCGGGGACGACGGGTGGATCGCCGAGCGGATCGCCGAAGAGTACCAGCGAGCGGTGCGGA CCATTTTGGCAGTCACCGGTCAATGCGAACTCTTGGAGCGTTCGCCGATCCTCGCCCGACTGGTGCGGTTACGCAATCCG TACGTCGATGTCCTGCATGCGTGTCAGATCGTCTTGTTACGTCGGTACCGGGCAGGTGCCGGCAAGGGCGAGCGCCAATC GCGCCTCTTGGATGCCATCCATCACAGCATCAATGCGATCGCAGCAGGGTTGCAGACGACCGGTTGA
Upstream 100 bases:
>100_bases AAACTCTCACAGCTGTAGAGAGTACCCTAGATCACGCGACTGATCGCGACCAGTGCGTGCGAGGATGCATGCAGGACTCG ACGGAGAGGAGAGACCAGCA
Downstream 100 bases:
>100_bases GCGGCGCAGGTGGCGAAACGAGCACTCGTTCGATTTCCTGTCGTGCAGAAGAATCGCTCTCTTGCGCGAGCGCACGCTGG AGCACGGGAAGGCTAGCGGT
Product: phosphoenolpyruvate carboxylase
Products: NA
Alternate protein names: PEPC; PEPCase [H]
Number of amino acids: Translated: 928; Mature: 927
Protein sequence:
>928_residues MAGGRALDDERSAKALRAEPIEGLRNEVNLLGALLGDVLREQGGTELFDLVEWARLQSITGRTVGNMSDAFRGLLARLEE ASDEEIFGLVRAFGIFFHLINLAEQHHRVRTLRQRERQERALHESLEEAFLTLRDRGVEPDRVKELLDDLLLFPVLTAHP SETRRRTVLQRLAALGQLIQQLDDTRLSPRERDWLFDRLREEITLLWQTAETRLARPTPLDEVRSTIAILAGPIYDVVPF FRRALRRAILRAYPELTSEALWNRLPIRIGSWVGGDRDGNPAVTAAVTEATARLMREAILRRYLEEVVDLRRALSVSARL RGASDELMATIDQERERLGFAPVRAWADEPYRRMLGLIEERLRRTERGEQGGYAGPEEFATHLKVMADSLRQHEGHWIAD GRLADLIARVDVFGFHLAELEIRQDAARYREALAELFALVGCAGYEAMPSDEREHLVLTRLEQGVFGLPRGALSPDTREV LATFDAIGRIQRLSGERACHTVIVSMTREPADVLGTVVLAREAGLIDFATDGAVRHCRIDVVPLFEQIAELDRCDQILAR LLANPIYRTVVRLRGNQQEVMLGYSDSNKDGGYVSSNWRIYRAQERLAEVARQFGAQLRLFYGRGGAIGRGGGPMGRAIR ARPAAARRPVLKTTEQGEVIFARYSDPAIALRHWEQMTHASIGSLGSDPDPSMPESWYRMMEQLATWSQEAYERLVKDEP TFVRFFTSATPFPELASLNLASRPVARRGSPESGLCFADLRAIPWVFSWTQTRVNLPGWYGLGTALERALAAGEESTLRE MYYRWPFFEMLLDNAQISLATADMLIAECYATLAGDDGWIAERIAEEYQRAVRTILAVTGQCELLERSPILARLVRLRNP YVDVLHACQIVLLRRYRAGAGKGERQSRLLDAIHHSINAIAAGLQTTG
Sequences:
>Translated_928_residues MAGGRALDDERSAKALRAEPIEGLRNEVNLLGALLGDVLREQGGTELFDLVEWARLQSITGRTVGNMSDAFRGLLARLEE ASDEEIFGLVRAFGIFFHLINLAEQHHRVRTLRQRERQERALHESLEEAFLTLRDRGVEPDRVKELLDDLLLFPVLTAHP SETRRRTVLQRLAALGQLIQQLDDTRLSPRERDWLFDRLREEITLLWQTAETRLARPTPLDEVRSTIAILAGPIYDVVPF FRRALRRAILRAYPELTSEALWNRLPIRIGSWVGGDRDGNPAVTAAVTEATARLMREAILRRYLEEVVDLRRALSVSARL RGASDELMATIDQERERLGFAPVRAWADEPYRRMLGLIEERLRRTERGEQGGYAGPEEFATHLKVMADSLRQHEGHWIAD GRLADLIARVDVFGFHLAELEIRQDAARYREALAELFALVGCAGYEAMPSDEREHLVLTRLEQGVFGLPRGALSPDTREV LATFDAIGRIQRLSGERACHTVIVSMTREPADVLGTVVLAREAGLIDFATDGAVRHCRIDVVPLFEQIAELDRCDQILAR LLANPIYRTVVRLRGNQQEVMLGYSDSNKDGGYVSSNWRIYRAQERLAEVARQFGAQLRLFYGRGGAIGRGGGPMGRAIR ARPAAARRPVLKTTEQGEVIFARYSDPAIALRHWEQMTHASIGSLGSDPDPSMPESWYRMMEQLATWSQEAYERLVKDEP TFVRFFTSATPFPELASLNLASRPVARRGSPESGLCFADLRAIPWVFSWTQTRVNLPGWYGLGTALERALAAGEESTLRE MYYRWPFFEMLLDNAQISLATADMLIAECYATLAGDDGWIAERIAEEYQRAVRTILAVTGQCELLERSPILARLVRLRNP YVDVLHACQIVLLRRYRAGAGKGERQSRLLDAIHHSINAIAAGLQTTG >Mature_927_residues AGGRALDDERSAKALRAEPIEGLRNEVNLLGALLGDVLREQGGTELFDLVEWARLQSITGRTVGNMSDAFRGLLARLEEA SDEEIFGLVRAFGIFFHLINLAEQHHRVRTLRQRERQERALHESLEEAFLTLRDRGVEPDRVKELLDDLLLFPVLTAHPS ETRRRTVLQRLAALGQLIQQLDDTRLSPRERDWLFDRLREEITLLWQTAETRLARPTPLDEVRSTIAILAGPIYDVVPFF RRALRRAILRAYPELTSEALWNRLPIRIGSWVGGDRDGNPAVTAAVTEATARLMREAILRRYLEEVVDLRRALSVSARLR GASDELMATIDQERERLGFAPVRAWADEPYRRMLGLIEERLRRTERGEQGGYAGPEEFATHLKVMADSLRQHEGHWIADG RLADLIARVDVFGFHLAELEIRQDAARYREALAELFALVGCAGYEAMPSDEREHLVLTRLEQGVFGLPRGALSPDTREVL ATFDAIGRIQRLSGERACHTVIVSMTREPADVLGTVVLAREAGLIDFATDGAVRHCRIDVVPLFEQIAELDRCDQILARL LANPIYRTVVRLRGNQQEVMLGYSDSNKDGGYVSSNWRIYRAQERLAEVARQFGAQLRLFYGRGGAIGRGGGPMGRAIRA RPAAARRPVLKTTEQGEVIFARYSDPAIALRHWEQMTHASIGSLGSDPDPSMPESWYRMMEQLATWSQEAYERLVKDEPT FVRFFTSATPFPELASLNLASRPVARRGSPESGLCFADLRAIPWVFSWTQTRVNLPGWYGLGTALERALAAGEESTLREM YYRWPFFEMLLDNAQISLATADMLIAECYATLAGDDGWIAERIAEEYQRAVRTILAVTGQCELLERSPILARLVRLRNPY VDVLHACQIVLLRRYRAGAGKGERQSRLLDAIHHSINAIAAGLQTTG
Specific function: Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle [H]
COG id: COG2352
COG function: function code C; Phosphoenolpyruvate carboxylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEPCase type 1 family [H]
Homologues:
Organism=Escherichia coli, GI1790393, Length=934, Percent_Identity=33.8329764453961, Blast_Score=423, Evalue=1e-119,
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021135 - InterPro: IPR018129 - InterPro: IPR022805 - InterPro: IPR015813 [H]
Pfam domain/function: PF00311 PEPcase [H]
EC number: =4.1.1.31 [H]
Molecular weight: Translated: 104586; Mature: 104455
Theoretical pI: Translated: 6.58; Mature: 6.58
Prosite motif: PS00393 PEPCASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGGRALDDERSAKALRAEPIEGLRNEVNLLGALLGDVLREQGGTELFDLVEWARLQSIT CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC GRTVGNMSDAFRGLLARLEEASDEEIFGLVRAFGIFFHLINLAEQHHRVRTLRQRERQER CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALHESLEEAFLTLRDRGVEPDRVKELLDDLLLFPVLTAHPSETRRRTVLQRLAALGQLIQ HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH QLDDTRLSPRERDWLFDRLREEITLLWQTAETRLARPTPLDEVRSTIAILAGPIYDVVPF HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH FRRALRRAILRAYPELTSEALWNRLPIRIGSWVGGDRDGNPAVTAAVTEATARLMREAIL HHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH RRYLEEVVDLRRALSVSARLRGASDELMATIDQERERLGFAPVRAWADEPYRRMLGLIEE HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHH RLRRTERGEQGGYAGPEEFATHLKVMADSLRQHEGHWIADGRLADLIARVDVFGFHLAEL HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHH EIRQDAARYREALAELFALVGCAGYEAMPSDEREHLVLTRLEQGVFGLPRGALSPDTREV HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHH LATFDAIGRIQRLSGERACHTVIVSMTREPADVLGTVVLAREAGLIDFATDGAVRHCRID HHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCHHHEEEH VVPLFEQIAELDRCDQILARLLANPIYRTVVRLRGNQQEVMLGYSDSNKDGGYVSSNWRI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEECCCCEE YRAQERLAEVARQFGAQLRLFYGRGGAIGRGGGPMGRAIRARPAAARRPVLKTTEQGEVI EHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHCCCHHHCCCCCCCCCCCCEE FARYSDPAIALRHWEQMTHASIGSLGSDPDPSMPESWYRMMEQLATWSQEAYERLVKDEP EEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC TFVRFFTSATPFPELASLNLASRPVARRGSPESGLCFADLRAIPWVFSWTQTRVNLPGWY CCEEEECCCCCCCHHHHCCCCCCCHHHCCCCCCCCCHHHHHHCCHHEECHHHEECCCCCH GLGTALERALAAGEESTLREMYYRWPFFEMLLDNAQISLATADMLIAECYATLAGDDGWI HHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHH AERIAEEYQRAVRTILAVTGQCELLERSPILARLVRLRNPYVDVLHACQIVLLRRYRAGA HHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC GKGERQSRLLDAIHHSINAIAAGLQTTG CCCHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure AGGRALDDERSAKALRAEPIEGLRNEVNLLGALLGDVLREQGGTELFDLVEWARLQSIT CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC GRTVGNMSDAFRGLLARLEEASDEEIFGLVRAFGIFFHLINLAEQHHRVRTLRQRERQER CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALHESLEEAFLTLRDRGVEPDRVKELLDDLLLFPVLTAHPSETRRRTVLQRLAALGQLIQ HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH QLDDTRLSPRERDWLFDRLREEITLLWQTAETRLARPTPLDEVRSTIAILAGPIYDVVPF HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH FRRALRRAILRAYPELTSEALWNRLPIRIGSWVGGDRDGNPAVTAAVTEATARLMREAIL HHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH RRYLEEVVDLRRALSVSARLRGASDELMATIDQERERLGFAPVRAWADEPYRRMLGLIEE HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHH RLRRTERGEQGGYAGPEEFATHLKVMADSLRQHEGHWIADGRLADLIARVDVFGFHLAEL HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHH EIRQDAARYREALAELFALVGCAGYEAMPSDEREHLVLTRLEQGVFGLPRGALSPDTREV HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHH LATFDAIGRIQRLSGERACHTVIVSMTREPADVLGTVVLAREAGLIDFATDGAVRHCRID HHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCHHHEEEH VVPLFEQIAELDRCDQILARLLANPIYRTVVRLRGNQQEVMLGYSDSNKDGGYVSSNWRI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEECCCCEE YRAQERLAEVARQFGAQLRLFYGRGGAIGRGGGPMGRAIRARPAAARRPVLKTTEQGEVI EHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHCCCHHHCCCCCCCCCCCCEE FARYSDPAIALRHWEQMTHASIGSLGSDPDPSMPESWYRMMEQLATWSQEAYERLVKDEP EEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC TFVRFFTSATPFPELASLNLASRPVARRGSPESGLCFADLRAIPWVFSWTQTRVNLPGWY CCEEEECCCCCCCHHHHCCCCCCCHHHCCCCCCCCCHHHHHHCCHHEECHHHEECCCCCH GLGTALERALAAGEESTLREMYYRWPFFEMLLDNAQISLATADMLIAECYATLAGDDGWI HHHHHHHHHHHCCCHHHHHHHHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHH AERIAEEYQRAVRTILAVTGQCELLERSPILARLVRLRNPYVDVLHACQIVLLRRYRAGA HHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC GKGERQSRLLDAIHHSINAIAAGLQTTG CCCHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA