| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is ald [H]
Identifier: 221633041
GI number: 221633041
Start: 1026627
End: 1027754
Strand: Reverse
Name: ald [H]
Synonym: trd_1056
Alternate gene names: 221633041
Gene position: 1027754-1026627 (Counterclockwise)
Preceding gene: 221633046
Following gene: 221633040
Centisome position: 51.31
GC content: 60.2
Gene sequence:
>1128_bases ATGGGAGGTCGAGCCTTGATCATAGGGATTCCACGCGAGAGGAAACTCCGCGAATATCGTGTTGCCCAGCCACCCCACGG GGTACGCGAACTGGTTCGTCATGGACACCGAGTGCTCGTGGAGCGTGGGGCGGGGGTCGGCAGCGGATTCACCGACACCG ACTACGAAGCGGCAGGAGCCGAATTGGTCGACGATGCGGAGGCAGTGTGGTCGCAATCCGAAATGATCGTCAAGGTCAAG GAGCCGATCGAGTCGGAGTATCGCTTTCTCCGCCCCGGCCTCATTTTGTTCACGTTTCTCCATCTCGCGGCTGACGAGCG TTTGACCCGCGAACTCATGGCGCGTGAGGTCATTGCGATTGCCTATGAAACGGTGCAATTACCGGATGGGTCGCTCCCGC TCCTCGCGCCGATGAGCGAGGTGGCTGGTCGACTGGCTATCCAGGTTGGGGCCTACTATTTGATGGAACCATATGGTGGG CGGGGCGTTTTGCTGGGCGGTGTTCCCGGTGTCGCACCGGGCCGCGTCGTCATCCTCGGGGGTGGCACGGTTGGGACCAA TGCTGCACAGATGGCGTTGGGCCTGGGTGCTGATGTCCTGTTGTTCGATATCAATGTCGAACGACTCCGTTACCTGGAGC AGATCTTGCACGGACGATTCCAGACGCGGGTTTCCAGTGAACAGGTGATCGGTGAGGCGATACGGGAGGCTGATCTCGTC ATCGGGGCTGTCTTGATTCCTGGTGCCCGTGCACCCAAACTGGTTACTCGTCAGATGGTTCGGGCGATGCGACCAGGGAG CGTCATCGTCGACGTCTCGATCGATCAGGGAGGGTGCGTCGAGACTGCACGGCCGACGACACATGACGCGCCGGTCTACG ACGTGGACGGTGTGCTGCACTACATGGTGACGAATATGCCGGGGGCTGTTCCCCGAACGAGCACATTCGCACTCAGCAAT GTGACACTGCGGTACGTCCTGGAATTGGCGGACCTCGGTTTGGTCGCTGCTGTCCAGCGCGACCGAGCGCTGGCCAAAGG CGTTAATGTGTTTAGAGGAAGGATCACGCATCCTTCCGTTGCGGAGTCGTTCGGTCTGCCGTACGTGCCTCTCGATGAGC TCTTGTAG
Upstream 100 bases:
>100_bases CGGTCACCGCTTGTGAGGAAGTCGAGCTCTCGGCGACAATAAGCGCCGTCCTGCCGGTTGGGGCGGCATGGGCGGCAGGA CGCGCGAGCGGCATGCATGG
Downstream 100 bases:
>100_bases AAGGGAGTAGCACGTGCGGTGAGCTTTCGTGTTTTCTCGCGATTCGGACGGAGAGTGGAGGCAGGACCGATGCAGCAGGC GATCGAGGAGTTCTTGACTG
Product: alanine dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 375; Mature: 374
Protein sequence:
>375_residues MGGRALIIGIPRERKLREYRVAQPPHGVRELVRHGHRVLVERGAGVGSGFTDTDYEAAGAELVDDAEAVWSQSEMIVKVK EPIESEYRFLRPGLILFTFLHLAADERLTRELMAREVIAIAYETVQLPDGSLPLLAPMSEVAGRLAIQVGAYYLMEPYGG RGVLLGGVPGVAPGRVVILGGGTVGTNAAQMALGLGADVLLFDINVERLRYLEQILHGRFQTRVSSEQVIGEAIREADLV IGAVLIPGARAPKLVTRQMVRAMRPGSVIVDVSIDQGGCVETARPTTHDAPVYDVDGVLHYMVTNMPGAVPRTSTFALSN VTLRYVLELADLGLVAAVQRDRALAKGVNVFRGRITHPSVAESFGLPYVPLDELL
Sequences:
>Translated_375_residues MGGRALIIGIPRERKLREYRVAQPPHGVRELVRHGHRVLVERGAGVGSGFTDTDYEAAGAELVDDAEAVWSQSEMIVKVK EPIESEYRFLRPGLILFTFLHLAADERLTRELMAREVIAIAYETVQLPDGSLPLLAPMSEVAGRLAIQVGAYYLMEPYGG RGVLLGGVPGVAPGRVVILGGGTVGTNAAQMALGLGADVLLFDINVERLRYLEQILHGRFQTRVSSEQVIGEAIREADLV IGAVLIPGARAPKLVTRQMVRAMRPGSVIVDVSIDQGGCVETARPTTHDAPVYDVDGVLHYMVTNMPGAVPRTSTFALSN VTLRYVLELADLGLVAAVQRDRALAKGVNVFRGRITHPSVAESFGLPYVPLDELL >Mature_374_residues GGRALIIGIPRERKLREYRVAQPPHGVRELVRHGHRVLVERGAGVGSGFTDTDYEAAGAELVDDAEAVWSQSEMIVKVKE PIESEYRFLRPGLILFTFLHLAADERLTRELMAREVIAIAYETVQLPDGSLPLLAPMSEVAGRLAIQVGAYYLMEPYGGR GVLLGGVPGVAPGRVVILGGGTVGTNAAQMALGLGADVLLFDINVERLRYLEQILHGRFQTRVSSEQVIGEAIREADLVI GAVLIPGARAPKLVTRQMVRAMRPGSVIVDVSIDQGGCVETARPTTHDAPVYDVDGVLHYMVTNMPGAVPRTSTFALSNV TLRYVLELADLGLVAAVQRDRALAKGVNVFRGRITHPSVAESFGLPYVPLDELL
Specific function: May play a role in cell wall synthesis as L-alanine is an important constituent of the peptidoglycan layer [H]
COG id: COG0686
COG function: function code E; Alanine dehydrogenase
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AlaDH/PNT family [H]
Homologues:
Organism=Homo sapiens, GI122939155, Length=350, Percent_Identity=29.1428571428571, Blast_Score=143, Evalue=3e-34, Organism=Homo sapiens, GI122939153, Length=350, Percent_Identity=29.1428571428571, Blast_Score=143, Evalue=3e-34, Organism=Escherichia coli, GI1787887, Length=381, Percent_Identity=34.3832020997375, Blast_Score=162, Evalue=5e-41, Organism=Caenorhabditis elegans, GI17550456, Length=350, Percent_Identity=29.4285714285714, Blast_Score=149, Evalue=2e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007698 - InterPro: IPR008143 - InterPro: IPR007886 - InterPro: IPR008141 [H]
Pfam domain/function: PF01262 AlaDh_PNT_C; PF05222 AlaDh_PNT_N [H]
EC number: =1.4.1.1 [H]
Molecular weight: Translated: 40526; Mature: 40394
Theoretical pI: Translated: 6.33; Mature: 6.33
Prosite motif: PS00837 ALADH_PNT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGGRALIIGIPRERKLREYRVAQPPHGVRELVRHGHRVLVERGAGVGSGFTDTDYEAAGA CCCCEEEEECCCHHHHHHHCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHCCC ELVDDAEAVWSQSEMIVKVKEPIESEYRFLRPGLILFTFLHLAADERLTRELMAREVIAI HHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH AYETVQLPDGSLPLLAPMSEVAGRLAIQVGAYYLMEPYGGRGVLLGGVPGVAPGRVVILG HHHEEECCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCEEEEECCCCCCCCEEEEEE GGTVGTNAAQMALGLGADVLLFDINVERLRYLEQILHGRFQTRVSSEQVIGEAIREADLV CCCCCCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH IGAVLIPGARAPKLVTRQMVRAMRPGSVIVDVSIDQGGCVETARPTTHDAPVYDVDGVLH EEHEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEHHHHHH YMVTNMPGAVPRTSTFALSNVTLRYVLELADLGLVAAVQRDRALAKGVNVFRGRITHPSV HHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCHH AESFGLPYVPLDELL HHHCCCCCCCHHHCC >Mature Secondary Structure GGRALIIGIPRERKLREYRVAQPPHGVRELVRHGHRVLVERGAGVGSGFTDTDYEAAGA CCCEEEEECCCHHHHHHHCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHCCC ELVDDAEAVWSQSEMIVKVKEPIESEYRFLRPGLILFTFLHLAADERLTRELMAREVIAI HHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH AYETVQLPDGSLPLLAPMSEVAGRLAIQVGAYYLMEPYGGRGVLLGGVPGVAPGRVVILG HHHEEECCCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCEEEEECCCCCCCCEEEEEE GGTVGTNAAQMALGLGADVLLFDINVERLRYLEQILHGRFQTRVSSEQVIGEAIREADLV CCCCCCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH IGAVLIPGARAPKLVTRQMVRAMRPGSVIVDVSIDQGGCVETARPTTHDAPVYDVDGVLH EEHEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEHHHHHH YMVTNMPGAVPRTSTFALSNVTLRYVLELADLGLVAAVQRDRALAKGVNVFRGRITHPSV HHHHCCCCCCCCCCEEEHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCCHH AESFGLPYVPLDELL HHHCCCCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA