| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is otsB [H]
Identifier: 221632885
GI number: 221632885
Start: 867288
End: 868079
Strand: Reverse
Name: otsB [H]
Synonym: trd_0884
Alternate gene names: 221632885
Gene position: 868079-867288 (Counterclockwise)
Preceding gene: 221632887
Following gene: 221632882
Centisome position: 43.34
GC content: 63.38
Gene sequence:
>792_bases TTGGAATCGATCGTTGGCGCGATGCTCGCCGTACTCGACGAGACAGGAGCGGGGATCATCACCGATTTCGATGGGACGCT GAGTCCGATCGTCGCTGATCCTGAGAAGGCAACCGTCCATCCAGTCGCCCGCCGAGCCTTGCTCCGTCTCGTCAAGACCG TTTCGCTCGTCGCTATCGTCTCGGGTCGGCGCGCCTCCGACGTCGCTGGTCGGCTGGCAGTTCCAGGACTGGTGATCGTG GGCAACCACGGACTCGAATGGTTGGTCGGAGGTCACGTGGAGGTCGCTCCCGAGGCCGAACCCTGGCTCGGCGCGGTACG AGCGGCTGCGGCCGAAGTCCAGCGACTTTGTCCGGACGTGCTGGTCGAGGACAAGGCGCTCACCGTCACGATTCATCTGC GGCGACTGCGGAATGTCTCGCGCCGGCGGGCAGTGGAGACCGTCGTGCGGCGGGTCGCAGGGGAGTACGGGTTGTCGATC CGTCAGGGACGCGAGGTGCTGGAGTTGCGACCACCTGTCCCGATCGACAAGGGTACGGCTGTCGATCAGCTCGTTACCCG TTACCAGCTCCGGGCTGTCGTTTTTGCTGGGGACGATGTCACTGATCTCGATGCCATGCGCTTGCTCGTCGTTCGACGAG CTAGCGGACAGGTTCATGCTCTCTTGATCGGTGTCTGGAGCTCGGAAGCACCGCCAGAACTGAAGCAGCTCGCCGATCTG CTGGTACCGGGCGTGGATGCATTCGCCGCTGTGTTGGACGAGCTCGCTCATCGACTCGCTGAGCTTCAGTAG
Upstream 100 bases:
>100_bases TGGGCACCAGTTGCCCCCTTCCCTCCGGCCGCAGTATACGACTCGTCAGGACTGATCTGGGCGGGGTGCACTGCTGTCGG GTGGCAGGGGGAGGAAGACG
Downstream 100 bases:
>100_bases GTATCGAGCGGCCAGGCGGGGCGCTTCACCGATCGATATGAGAAGAAGGCGAGGTCCGGTGTGGCAATGCCTGGAGTGAC TGCCTGCAGCACTTGCGCCG
Product: trehalose-phosphatase
Products: NA
Alternate protein names: TPP; Trehalose-6-phosphate phosphatase [H]
Number of amino acids: Translated: 263; Mature: 263
Protein sequence:
>263_residues MESIVGAMLAVLDETGAGIITDFDGTLSPIVADPEKATVHPVARRALLRLVKTVSLVAIVSGRRASDVAGRLAVPGLVIV GNHGLEWLVGGHVEVAPEAEPWLGAVRAAAAEVQRLCPDVLVEDKALTVTIHLRRLRNVSRRRAVETVVRRVAGEYGLSI RQGREVLELRPPVPIDKGTAVDQLVTRYQLRAVVFAGDDVTDLDAMRLLVVRRASGQVHALLIGVWSSEAPPELKQLADL LVPGVDAFAAVLDELAHRLAELQ
Sequences:
>Translated_263_residues MESIVGAMLAVLDETGAGIITDFDGTLSPIVADPEKATVHPVARRALLRLVKTVSLVAIVSGRRASDVAGRLAVPGLVIV GNHGLEWLVGGHVEVAPEAEPWLGAVRAAAAEVQRLCPDVLVEDKALTVTIHLRRLRNVSRRRAVETVVRRVAGEYGLSI RQGREVLELRPPVPIDKGTAVDQLVTRYQLRAVVFAGDDVTDLDAMRLLVVRRASGQVHALLIGVWSSEAPPELKQLADL LVPGVDAFAAVLDELAHRLAELQ >Mature_263_residues MESIVGAMLAVLDETGAGIITDFDGTLSPIVADPEKATVHPVARRALLRLVKTVSLVAIVSGRRASDVAGRLAVPGLVIV GNHGLEWLVGGHVEVAPEAEPWLGAVRAAAAEVQRLCPDVLVEDKALTVTIHLRRLRNVSRRRAVETVVRRVAGEYGLSI RQGREVLELRPPVPIDKGTAVDQLVTRYQLRAVVFAGDDVTDLDAMRLLVVRRASGQVHALLIGVWSSEAPPELKQLADL LVPGVDAFAAVLDELAHRLAELQ
Specific function: Removes the phosphate from trehalose 6-phosphate to produce free trehalose [H]
COG id: COG1877
COG function: function code G; Trehalose-6-phosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trehalose phosphatase family [H]
Homologues:
Organism=Drosophila melanogaster, GI221473368, Length=216, Percent_Identity=31.9444444444444, Blast_Score=93, Evalue=1e-19, Organism=Drosophila melanogaster, GI20129307, Length=216, Percent_Identity=31.9444444444444, Blast_Score=93, Evalue=1e-19, Organism=Drosophila melanogaster, GI24582490, Length=216, Percent_Identity=31.9444444444444, Blast_Score=93, Evalue=1e-19, Organism=Drosophila melanogaster, GI19920676, Length=203, Percent_Identity=32.512315270936, Blast_Score=87, Evalue=1e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023214 - InterPro: IPR006379 - InterPro: IPR003337 [H]
Pfam domain/function: PF02358 Trehalose_PPase [H]
EC number: =3.1.3.12 [H]
Molecular weight: Translated: 28232; Mature: 28232
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MESIVGAMLAVLDETGAGIITDFDGTLSPIVADPEKATVHPVARRALLRLVKTVSLVAIV CHHHHHHHHHHHHCCCCCEEEECCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHH SGRRASDVAGRLAVPGLVIVGNHGLEWLVGGHVEVAPEAEPWLGAVRAAAAEVQRLCPDV CCCCHHHHHCHHCCCCEEEECCCCCEEEECCCEEECCCCCHHHHHHHHHHHHHHHHCHHH LVEDKALTVTIHLRRLRNVSRRRAVETVVRRVAGEYGLSIRQGREVLELRPPVPIDKGTA HCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHEECCCCCCCCCCCH VDQLVTRYQLRAVVFAGDDVTDLDAMRLLVVRRASGQVHALLIGVWSSEAPPELKQLADL HHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHH LVPGVDAFAAVLDELAHRLAELQ HCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MESIVGAMLAVLDETGAGIITDFDGTLSPIVADPEKATVHPVARRALLRLVKTVSLVAIV CHHHHHHHHHHHHCCCCCEEEECCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHH SGRRASDVAGRLAVPGLVIVGNHGLEWLVGGHVEVAPEAEPWLGAVRAAAAEVQRLCPDV CCCCHHHHHCHHCCCCEEEECCCCCEEEECCCEEECCCCCHHHHHHHHHHHHHHHHCHHH LVEDKALTVTIHLRRLRNVSRRRAVETVVRRVAGEYGLSIRQGREVLELRPPVPIDKGTA HCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHEECCCCCCCCCCCH VDQLVTRYQLRAVVFAGDDVTDLDAMRLLVVRRASGQVHALLIGVWSSEAPPELKQLADL HHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHH LVPGVDAFAAVLDELAHRLAELQ HCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8446027; 11234002 [H]