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The map label for this gene is 221632166

Identifier: 221632166

GI number: 221632166

Start: 138155

End: 139411

Strand: Reverse

Name: 221632166

Synonym: trd_0132

Alternate gene names: NA

Gene position: 139411-138155 (Counterclockwise)

Preceding gene: 221632167

Following gene: 221632165

Centisome position: 6.96

GC content: 58.23

Gene sequence:

>1257_bases
GTGTCCTTCGTTCGCGCCACGTATTATGTGGAAACCCCTCTGACGCTTGAAGCGGCCGCTGAAGCGCTGGCGAGCGAACA
ATCCACAGGCACTTTCATCGCGGTGCCGCTGGAAACGGCGGAACTCAAAGCCCGCTACCGCGCCCGTATCGAGCGAATCG
AACTGATCGAAACCCGGTCTCGGCCGACGCTCCCCGGGAGTCGCCCGGCTTCGGGCAGCTACCAGTGCGGTTTCGTCGAG
CTTGCCTTTCCCCTGGAAAATATGGGGTGCAACCTTCCCACGCTGATGGCTACTCTTGCAGGCAATCTGTTCGAGCTTTC
TGAACTCTCCGCAATTCGCCTCGTCGATCTCGACCTCCCGGACGAGTTCGCGCAGGCCTACACTGGACCGCGCTTCGGTA
TCCAAGGAACGCGAGACATCGCTCAGGTCTACGATCGGCCGCTTATCGGCACGATCATCAAACCGAGCGTCGGGCTGTCT
CCCGAGCAAACAGCTGTGGTCGTGCGAGAACTGGTCGAGGCCGGTATCGACTTCATCAAAGACGACGAGTTGATGGCCAA
TCCACCGCATAACCCGCTCCCCGCCCGCGCTCGCGCCGTGATGCGAGTGATTCGTGATTATGCCGATCGCACCGGGAAAT
ATGTGATTTATGCCTTCAATATTTCTGATCGTCTGGAAGACATGATTCGACACATTGAAATACTAGTAGAGGAAGGGGCT
CGCTGCTGTATGGTAAGCTTAAATTGGGTAGGAATAGCAGCCTTCGATTATCTTCGCCGTAATTGCCCACTGATCATTCA
TGGTCACCGCAATGGTTGGGGCATGATGACGCGCGCACCTGGTCTCGGGATGGACTTTCGGGCGTATCAAAAGATCTGGC
GTCTCGCCGGTGTCGATCATCTCCATGTCAATGGGCTCGCCAACAAATTCTGGGAGCCGGACGACAGTGTCGTCCGTTCG
ATCCACGACATGCTGCAGCCGCTGTTCGGTGGGTACTTCGCCATGCCGGTCATCTCGTCCGGGCAATGGGGTGGACAGGC
GCCCGATACCTATCGCCGTTGTCGGACTATAGATCTCCTGTACCTTGCCGGAGGTGGAATTTTTGCTCATCCGCACGGTG
TAGCAGCAGGAATTCGGGCGATCCGCGAGGCGTGGGAAGCCGCAGTCGCGGGGATCTCGCTCGCAGAATACGCGCAAACC
CATCCTGATCTCGCAGCAGCTCTCCATCACTTCGGCACGGCTCGGAGGGGGCGCTGA

Upstream 100 bases:

>100_bases
AATTTGCGAACAATGCAATTAGTCTTTGCCGCTTATCGCTCTGCCGACACTACCTCGAGCATCGCCCTCGATCAGTCCGA
GTCAGAAAGGAGGGGCTGAC

Downstream 100 bases:

>100_bases
TGTCGGTCGACTTCGCGTACATCGCCGACGACTTCACCGGAGCGACTGACGTGCTCGAGGCACTCGCTTCAGCCGGTGCC
CGAGCCCGCCTCTACCTCGA

Product: ribulose bisphosphate carboxylase

Products: 3-phospho-D-glycerate; H+

Alternate protein names: RuBisCO-like protein [H]

Number of amino acids: Translated: 418; Mature: 417

Protein sequence:

>418_residues
MSFVRATYYVETPLTLEAAAEALASEQSTGTFIAVPLETAELKARYRARIERIELIETRSRPTLPGSRPASGSYQCGFVE
LAFPLENMGCNLPTLMATLAGNLFELSELSAIRLVDLDLPDEFAQAYTGPRFGIQGTRDIAQVYDRPLIGTIIKPSVGLS
PEQTAVVVRELVEAGIDFIKDDELMANPPHNPLPARARAVMRVIRDYADRTGKYVIYAFNISDRLEDMIRHIEILVEEGA
RCCMVSLNWVGIAAFDYLRRNCPLIIHGHRNGWGMMTRAPGLGMDFRAYQKIWRLAGVDHLHVNGLANKFWEPDDSVVRS
IHDMLQPLFGGYFAMPVISSGQWGGQAPDTYRRCRTIDLLYLAGGGIFAHPHGVAAGIRAIREAWEAAVAGISLAEYAQT
HPDLAAALHHFGTARRGR

Sequences:

>Translated_418_residues
MSFVRATYYVETPLTLEAAAEALASEQSTGTFIAVPLETAELKARYRARIERIELIETRSRPTLPGSRPASGSYQCGFVE
LAFPLENMGCNLPTLMATLAGNLFELSELSAIRLVDLDLPDEFAQAYTGPRFGIQGTRDIAQVYDRPLIGTIIKPSVGLS
PEQTAVVVRELVEAGIDFIKDDELMANPPHNPLPARARAVMRVIRDYADRTGKYVIYAFNISDRLEDMIRHIEILVEEGA
RCCMVSLNWVGIAAFDYLRRNCPLIIHGHRNGWGMMTRAPGLGMDFRAYQKIWRLAGVDHLHVNGLANKFWEPDDSVVRS
IHDMLQPLFGGYFAMPVISSGQWGGQAPDTYRRCRTIDLLYLAGGGIFAHPHGVAAGIRAIREAWEAAVAGISLAEYAQT
HPDLAAALHHFGTARRGR
>Mature_417_residues
SFVRATYYVETPLTLEAAAEALASEQSTGTFIAVPLETAELKARYRARIERIELIETRSRPTLPGSRPASGSYQCGFVEL
AFPLENMGCNLPTLMATLAGNLFELSELSAIRLVDLDLPDEFAQAYTGPRFGIQGTRDIAQVYDRPLIGTIIKPSVGLSP
EQTAVVVRELVEAGIDFIKDDELMANPPHNPLPARARAVMRVIRDYADRTGKYVIYAFNISDRLEDMIRHIEILVEEGAR
CCMVSLNWVGIAAFDYLRRNCPLIIHGHRNGWGMMTRAPGLGMDFRAYQKIWRLAGVDHLHVNGLANKFWEPDDSVVRSI
HDMLQPLFGGYFAMPVISSGQWGGQAPDTYRRCRTIDLLYLAGGGIFAHPHGVAAGIRAIREAWEAAVAGISLAEYAQTH
PDLAAALHHFGTARRGR

Specific function: May be involved in sulfur metabolism and oxidative stress response. Does not show RuBisCO activity [H]

COG id: COG1850

COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO large chain family. Type IV subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020878
- InterPro:   IPR000685
- InterPro:   IPR017443 [H]

Pfam domain/function: PF00016 RuBisCO_large [H]

EC number: 4.1.1.39

Molecular weight: Translated: 46266; Mature: 46134

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: PS00157 RUBISCO_LARGE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFVRATYYVETPLTLEAAAEALASEQSTGTFIAVPLETAELKARYRARIERIELIETRS
CCCEEEEEEEECCCCHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCC
RPTLPGSRPASGSYQCGFVELAFPLENMGCNLPTLMATLAGNLFELSELSAIRLVDLDLP
CCCCCCCCCCCCCCCCEEEEEECCHHHCCCCHHHHHHHHCCCHHHHHHCCEEEEEECCCC
DEFAQAYTGPRFGIQGTRDIAQVYDRPLIGTIIKPSVGLSPEQTAVVVRELVEAGIDFIK
HHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCC
DDELMANPPHNPLPARARAVMRVIRDYADRTGKYVIYAFNISDRLEDMIRHIEILVEEGA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCC
RCCMVSLNWVGIAAFDYLRRNCPLIIHGHRNGWGMMTRAPGLGMDFRAYQKIWRLAGVDH
CEEEEEECHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCCE
LHVNGLANKFWEPDDSVVRSIHDMLQPLFGGYFAMPVISSGQWGGQAPDTYRRCRTIDLL
EEECHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEHHEECCCCCCCCCCHHHHHHHHEEEE
YLAGGGIFAHPHGVAAGIRAIREAWEAAVAGISLAEYAQTHPDLAAALHHFGTARRGR
EEECCCEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SFVRATYYVETPLTLEAAAEALASEQSTGTFIAVPLETAELKARYRARIERIELIETRS
CCEEEEEEEECCCCHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCC
RPTLPGSRPASGSYQCGFVELAFPLENMGCNLPTLMATLAGNLFELSELSAIRLVDLDLP
CCCCCCCCCCCCCCCCEEEEEECCHHHCCCCHHHHHHHHCCCHHHHHHCCEEEEEECCCC
DEFAQAYTGPRFGIQGTRDIAQVYDRPLIGTIIKPSVGLSPEQTAVVVRELVEAGIDFIK
HHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCC
DDELMANPPHNPLPARARAVMRVIRDYADRTGKYVIYAFNISDRLEDMIRHIEILVEEGA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCC
RCCMVSLNWVGIAAFDYLRRNCPLIIHGHRNGWGMMTRAPGLGMDFRAYQKIWRLAGVDH
CEEEEEECHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCCCCCCHHHHHHHHHHHCCCE
LHVNGLANKFWEPDDSVVRSIHDMLQPLFGGYFAMPVISSGQWGGQAPDTYRRCRTIDLL
EEECHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEHHEECCCCCCCCCCHHHHHHHHEEEE
YLAGGGIFAHPHGVAAGIRAIREAWEAAVAGISLAEYAQTHPDLAAALHHFGTARRGR
EEECCCEEECCCHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: D-ribulose 1,5-bisphosphate; CO2; H2O

Specific reaction: D-ribulose 1,5-bisphosphate + CO2 + H2O = 2 3-phospho-D-glycerate + 2 H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12910271 [H]