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The map label for this gene is ycjO [C]

Identifier: 220932822

GI number: 220932822

Start: 2142932

End: 2143903

Strand: Reverse

Name: ycjO [C]

Synonym: Hore_19880

Alternate gene names: 220932822

Gene position: 2143903-2142932 (Counterclockwise)

Preceding gene: 220932823

Following gene: 220932821

Centisome position: 83.16

GC content: 39.2

Gene sequence:

>972_bases
TTGAAAGGGTTATTATCCAGAAAAATTAATAAACCTGTTATGTTGGCAGAAAAAAAAGACGGTATATACCCATATATTTT
GCTGGCCCCCAGTATTCTAATTTTACTGGCCGTTATTGTATTTCCAATTTTTATGTCCCTTTATATGAGCCTTAATGAAG
TCAGGGTTATTGCCGGTGGAATTAAATATACTTTTAAAGGGCTTGAAAACTACCTGTATTTTTTTAAAAACCCACTCTTC
TGGGAGTCTTTAAGGGTAACAACCTATTTCACCGTTGTCTCTTTAGTGATTGAATTGATTCTTGGTTTTTTCATGGCTTC
CATCCTCAACAGGGAGTTCTGGGGACGTAATATTGTAAGGTCTTTAATTTTGATACCATGGGCTGTTCCTACCGTAGTTA
ATGCCAGGATATGGCAGTGGATTTATAATGCCAATGACTTTGGAGCCCTCAATAGAATTTTAAAGGGTTTAAACATTATT
AAAGAAAATGTGGTCTGGCTCAGGGAGGTCACACCATTTGCCGGAAGCCTTATGGCAAAATTCTTTGAATGGTGTGGTGC
CTCACGGGCTCTCCATATGATTATCATTGGTGACACCTGGAAGGTGACTCCATTGGTAGCCCTGTTATTACTGGCCGGAA
TGCAGACAATTCCTGATTCCTTTTATGAAGCAGCAGATGTTGATGGGGCTAACTGGTGGCAGAAATTTAAATATATTACA
TTACCCCGGTTAAAGCCCGTTCTCCTGGTTATCCTGGTTTTAAGAACCATGGAACTCTTCCGGGTATTTGACATCCTTTA
CATCATTATGTCCTATCAGGTTAAGGTTCTTTCTATATTAACTTATGAAAACGGGTTTGTTTTCCTGAAGTTTGGCCGGG
CTGCAGCCCTTTCCTTTATCATTGGAACTATCATTATGGCTCTGGCTTTTGTATACATGAAGTTCCTCTATGTTGAGGAA
GGTGATGAATAA

Upstream 100 bases:

>100_bases
TTGAAGAGATTACTTCATTATCTGAAGAACTATCAAATATGGCCGATAAATTAAACGAACTGGTCAGGGAATTCAAACTA
GAAGAGAAGGAGGGGATAGT

Downstream 100 bases:

>100_bases
ATGAAGTCAAAGAAGGTAAAACGATTCTTTTTATACGCCGGTGTAGTTTTAATAGTGGTCTGGACCCTGGCCCCGGTTGT
CTGGTTATTTATTTCAAGTA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 323

Protein sequence:

>323_residues
MKGLLSRKINKPVMLAEKKDGIYPYILLAPSILILLAVIVFPIFMSLYMSLNEVRVIAGGIKYTFKGLENYLYFFKNPLF
WESLRVTTYFTVVSLVIELILGFFMASILNREFWGRNIVRSLILIPWAVPTVVNARIWQWIYNANDFGALNRILKGLNII
KENVVWLREVTPFAGSLMAKFFEWCGASRALHMIIIGDTWKVTPLVALLLLAGMQTIPDSFYEAADVDGANWWQKFKYIT
LPRLKPVLLVILVLRTMELFRVFDILYIIMSYQVKVLSILTYENGFVFLKFGRAAALSFIIGTIIMALAFVYMKFLYVEE
GDE

Sequences:

>Translated_323_residues
MKGLLSRKINKPVMLAEKKDGIYPYILLAPSILILLAVIVFPIFMSLYMSLNEVRVIAGGIKYTFKGLENYLYFFKNPLF
WESLRVTTYFTVVSLVIELILGFFMASILNREFWGRNIVRSLILIPWAVPTVVNARIWQWIYNANDFGALNRILKGLNII
KENVVWLREVTPFAGSLMAKFFEWCGASRALHMIIIGDTWKVTPLVALLLLAGMQTIPDSFYEAADVDGANWWQKFKYIT
LPRLKPVLLVILVLRTMELFRVFDILYIIMSYQVKVLSILTYENGFVFLKFGRAAALSFIIGTIIMALAFVYMKFLYVEE
GDE
>Mature_323_residues
MKGLLSRKINKPVMLAEKKDGIYPYILLAPSILILLAVIVFPIFMSLYMSLNEVRVIAGGIKYTFKGLENYLYFFKNPLF
WESLRVTTYFTVVSLVIELILGFFMASILNREFWGRNIVRSLILIPWAVPTVVNARIWQWIYNANDFGALNRILKGLNII
KENVVWLREVTPFAGSLMAKFFEWCGASRALHMIIIGDTWKVTPLVALLLLAGMQTIPDSFYEAADVDGANWWQKFKYIT
LPRLKPVLLVILVLRTMELFRVFDILYIIMSYQVKVLSILTYENGFVFLKFGRAAALSFIIGTIIMALAFVYMKFLYVEE
GDE

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane (Probable) [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=249, Percent_Identity=32.9317269076305, Blast_Score=134, Evalue=9e-33,
Organism=Escherichia coli, GI1789861, Length=312, Percent_Identity=27.5641025641026, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1790465, Length=245, Percent_Identity=26.1224489795918, Blast_Score=69, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37212; Mature: 37212

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGLLSRKINKPVMLAEKKDGIYPYILLAPSILILLAVIVFPIFMSLYMSLNEVRVIAGG
CCCCHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IKYTFKGLENYLYFFKNPLFWESLRVTTYFTVVSLVIELILGFFMASILNREFWGRNIVR
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
SLILIPWAVPTVVNARIWQWIYNANDFGALNRILKGLNIIKENVVWLREVTPFAGSLMAK
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
FFEWCGASRALHMIIIGDTWKVTPLVALLLLAGMQTIPDSFYEAADVDGANWWQKFKYIT
HHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCHHHCCHHHHHHCCCCCHHHHHHHHHEE
LPRLKPVLLVILVLRTMELFRVFDILYIIMSYQVKVLSILTYENGFVFLKFGRAAALSFI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECHHHHHHHH
IGTIIMALAFVYMKFLYVEEGDE
HHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKGLLSRKINKPVMLAEKKDGIYPYILLAPSILILLAVIVFPIFMSLYMSLNEVRVIAGG
CCCCHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IKYTFKGLENYLYFFKNPLFWESLRVTTYFTVVSLVIELILGFFMASILNREFWGRNIVR
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
SLILIPWAVPTVVNARIWQWIYNANDFGALNRILKGLNIIKENVVWLREVTPFAGSLMAK
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
FFEWCGASRALHMIIIGDTWKVTPLVALLLLAGMQTIPDSFYEAADVDGANWWQKFKYIT
HHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCHHHCCHHHHHHCCCCCHHHHHHHHHEE
LPRLKPVLLVILVLRTMELFRVFDILYIIMSYQVKVLSILTYENGFVFLKFGRAAALSFI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEEECHHHHHHHH
IGTIIMALAFVYMKFLYVEEGDE
HHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA