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The map label for this gene is ycjP [H]

Identifier: 220932821

GI number: 220932821

Start: 2142074

End: 2142931

Strand: Reverse

Name: ycjP [H]

Synonym: Hore_19870

Alternate gene names: 220932821

Gene position: 2142931-2142074 (Counterclockwise)

Preceding gene: 220932822

Following gene: 220932820

Centisome position: 83.12

GC content: 42.54

Gene sequence:

>858_bases
ATGAAGTCAAAGAAGGTAAAACGATTCTTTTTATACGCCGGTGTAGTTTTAATAGTGGTCTGGACCCTGGCCCCGGTTGT
CTGGTTATTTATTTCAAGTATCAGTCCTCACAAAGAATTACTTGATACCTCGCAGTGGCTACCTGAAAACCCTACCCTGA
AGAATTATGTTACTTTTTTTAATCTATCAACCCATACCGGGGAGAGTTTTCTCTCGGCCCTGAGAAATAGTATTATCATT
GCCACATCGGTTACCATTATTTGCCTGGCGGCCAGTACTTTGGCGGCCTATGCCCTGGCCAGACTGGAATTCAAGGGGAA
AAAGTTTCTGGTGGTGAGTATGCTCTCAACCAGAATGTTACCAACCGTAGCCCTGATCATACCTTTTTTTGTTCTGGTAG
TGTATTATGTTGGTAGCTTTGTTCAGCTATATGATACCCGGATTAACCTGATAATCCTGTATACTTCTTTTATTCTTGGT
TTTGATATCTGGATTATGAGGGGATACCTCATGTCAATTCCTAAAGAACTTGAAGAAGCCGGTTTAATAGATGGTTTAAA
CCGCTGGGGGGTTCTCTTTAAAATAATTCTTCCCCTGTCGGCCCCGGGCCTTGTGGCTACAGGTATCTTCTCTTTTCTTC
TGGCCTGGAATGAGTTTCTGCTGGCTTTAATCTTCACTAAAAGTAATCAATCAATTACCCTGACTTTATTTATTCAGGAA
CTGGGAAGCCAGTATACAACATCCTGGGAACAGGTATCTGCAGCAGGTTTTATTGCCATTCTCCCCCCTGTAATTCTGGC
CCTGTTATTCCAGAAGTTCATTATTAAGGGACTGACAGCAGGGAGTGTCAAGGGATAA

Upstream 100 bases:

>100_bases
TGGCCGGGCTGCAGCCCTTTCCTTTATCATTGGAACTATCATTATGGCTCTGGCTTTTGTATACATGAAGTTCCTCTATG
TTGAGGAAGGTGATGAATAA

Downstream 100 bases:

>100_bases
AATAATATATCCGGGGATATTTCTATTCCCGGATTTTAATATTTGTTATAGTTAAAGGTTTTTAATCAACATTAATATTC
CTGTACGATTTATTTAGTTA

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MKSKKVKRFFLYAGVVLIVVWTLAPVVWLFISSISPHKELLDTSQWLPENPTLKNYVTFFNLSTHTGESFLSALRNSIII
ATSVTIICLAASTLAAYALARLEFKGKKFLVVSMLSTRMLPTVALIIPFFVLVVYYVGSFVQLYDTRINLIILYTSFILG
FDIWIMRGYLMSIPKELEEAGLIDGLNRWGVLFKIILPLSAPGLVATGIFSFLLAWNEFLLALIFTKSNQSITLTLFIQE
LGSQYTTSWEQVSAAGFIAILPPVILALLFQKFIIKGLTAGSVKG

Sequences:

>Translated_285_residues
MKSKKVKRFFLYAGVVLIVVWTLAPVVWLFISSISPHKELLDTSQWLPENPTLKNYVTFFNLSTHTGESFLSALRNSIII
ATSVTIICLAASTLAAYALARLEFKGKKFLVVSMLSTRMLPTVALIIPFFVLVVYYVGSFVQLYDTRINLIILYTSFILG
FDIWIMRGYLMSIPKELEEAGLIDGLNRWGVLFKIILPLSAPGLVATGIFSFLLAWNEFLLALIFTKSNQSITLTLFIQE
LGSQYTTSWEQVSAAGFIAILPPVILALLFQKFIIKGLTAGSVKG
>Mature_285_residues
MKSKKVKRFFLYAGVVLIVVWTLAPVVWLFISSISPHKELLDTSQWLPENPTLKNYVTFFNLSTHTGESFLSALRNSIII
ATSVTIICLAASTLAAYALARLEFKGKKFLVVSMLSTRMLPTVALIIPFFVLVVYYVGSFVQLYDTRINLIILYTSFILG
FDIWIMRGYLMSIPKELEEAGLIDGLNRWGVLFKIILPLSAPGLVATGIFSFLLAWNEFLLALIFTKSNQSITLTLFIQE
LGSQYTTSWEQVSAAGFIAILPPVILALLFQKFIIKGLTAGSVKG

Specific function: Probably part of the binding-protein-dependent transport system ycjNOP. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=285, Percent_Identity=32.6315789473684, Blast_Score=150, Evalue=7e-38,
Organism=Escherichia coli, GI1790464, Length=294, Percent_Identity=28.9115646258503, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1789860, Length=212, Percent_Identity=28.3018867924528, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31779; Mature: 31779

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKKVKRFFLYAGVVLIVVWTLAPVVWLFISSISPHKELLDTSQWLPENPTLKNYVTFF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHEEEE
NLSTHTGESFLSALRNSIIIATSVTIICLAASTLAAYALARLEFKGKKFLVVSMLSTRML
ECCCCCHHHHHHHHHHCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHH
PTVALIIPFFVLVVYYVGSFVQLYDTRINLIILYTSFILGFDIWIMRGYLMSIPKELEEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLIDGLNRWGVLFKIILPLSAPGLVATGIFSFLLAWNEFLLALIFTKSNQSITLTLFIQE
HHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEEEHHH
LGSQYTTSWEQVSAAGFIAILPPVILALLFQKFIIKGLTAGSVKG
HCHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKSKKVKRFFLYAGVVLIVVWTLAPVVWLFISSISPHKELLDTSQWLPENPTLKNYVTFF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHEEEE
NLSTHTGESFLSALRNSIIIATSVTIICLAASTLAAYALARLEFKGKKFLVVSMLSTRML
ECCCCCHHHHHHHHHHCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHH
PTVALIIPFFVLVVYYVGSFVQLYDTRINLIILYTSFILGFDIWIMRGYLMSIPKELEEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLIDGLNRWGVLFKIILPLSAPGLVATGIFSFLLAWNEFLLALIFTKSNQSITLTLFIQE
HHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEEEEEHHH
LGSQYTTSWEQVSAAGFIAILPPVILALLFQKFIIKGLTAGSVKG
HCHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]